Integrated databanks access and sequence/structure analysis services at the PBIL

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Integrated databanks access and sequence/structure analysis services at the PBIL (2003)

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by Guy Perrière , Christophe Combet , Simon Penel , Christophe Blanchet Jean Thioulouse , Christophe Blanchet , Jean Thioulouse , Christophe Geourjon , Julien Grassot , Céline Charavay , Manolo Gouy , Laurent Duret , Gilbert Deléage

Venue:	Nucleic Acids Res
Citations:	17 - 7 self

BibTeX

@ARTICLE{Perrière03integrateddatabanks,
    author = {Guy Perrière and Christophe Combet and Simon Penel and Christophe Blanchet Jean Thioulouse and Christophe Blanchet and Jean Thioulouse and Christophe Geourjon and Julien Grassot and Céline Charavay and Manolo Gouy and Laurent Duret and Gilbert Deléage},
    title = {Integrated databanks access and sequence/structure analysis services at the PBIL},
    journal = {Nucleic Acids Res},
    year = {2003},
    volume = {31},
    pages = {3393--3399}
}

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Abstract

The World Wide Web server of the PBIL (Po le Bioinformatique Lyonnais) provides on-line access to sequence databank and to many tools of nucleic acid and protein sequence analyses. This server allows to query nucleotide sequencebank in the EMBL and GenBank formats and protein sequence bank in the SWISS-PROT and PIR formats. The query engine on which our databank access is based is the ACNUC system. It allows the possibility to build complex queries to access functional zones of biological interest and to retrieve large sequence sets. Of special interest are the unique features provided by this system to query the data bank of gene families developed at the PBIL. The server also provides access to a wide range of sequence analysis methods: similarity search programs, multiple alignments, protein structure prediction and multivariate statistics. An originality of this server is the integration of these two aspects: sequence retrieval and sequence analysis. Indeed, thank to the introduction of re-usable lists, it is possible to perform treatments on large sets of data. The PBIL server can be reached at: http://pbil.univ-lyon1.fr.

Keyphrases

integrated databanks access sequence structure analysis service re-usable list protein sequence analysis acnuc system complex query large sequence set databank access wide range sequence analysis method gene family genbank format many tool protein sequence bank multiple alignment unique feature on-line access pir format data bank access functional zone world wide web server biological interest similarity search program protein structure prediction sequence retrieval large set bioinformatique lyonnais special interest pbil server sequence analysis query engine multivariate statistic nucleic acid

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