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...structure assignments (e.g., with long overlapping segments, unrealistically low or high secondary structure content, secondary structural element boundaries pointing to non-existing residues, etc.), =-=(4)-=- explicitly refer to existing automatic secondary structural assignment methods, most notably DSSP by Kabsch and Sander: (5) are not yet published or in press, (6) have less than 70 residues, and (7) ...

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...ary structural element boundaries pointing to non-existing residues, etc.), (4) explicitly refer to existing automatic secondary structural assignment methods, most notably DSSP by Kabsch and Sander: =-=(5)-=- are not yet published or in press, (6) have less than 70 residues, and (7) represent results of modeling studies. From the remaining protein structures, three subsets were created: (1) X-ray structur...

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...nd NMR protein structures were gathered from a recent release of the PDB databank.8 In correspondence with the goals of the present work, excluded were the protein chains that (1) list only C, atoms, =-=(2)-=- contain no secondary structure assignment made by the authors, (3) contain obviously wrong secondary structure assignments (e.g., with long overlapping segments, unrealistically low or high secondary...

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... (4) explicitly refer to existing automatic secondary structural assignment methods, most notably DSSP by Kabsch and Sander: (5) are not yet published or in press, (6) have less than 70 residues, and =-=(7)-=- represent results of modeling studies. From the remaining protein structures, three subsets were created: (1) X-ray structures at all resolutions as well as NMR structures (subset X + NMR), (2) X-ray...

Citation Context

...ing to non-existing residues, etc.), (4) explicitly refer to existing automatic secondary structural assignment methods, most notably DSSP by Kabsch and Sander: (5) are not yet published or in press, =-=(6)-=- have less than 70 residues, and (7) represent results of modeling studies. From the remaining protein structures, three subsets were created: (1) X-ray structures at all resolutions as well as NMR st...

Citation Context

...e PDB databank.8 In correspondence with the goals of the present work, excluded were the protein chains that (1) list only C, atoms, (2) contain no secondary structure assignment made by the authors, =-=(3)-=- contain obviously wrong secondary structure assignments (e.g., with long overlapping segments, unrealistically low or high secondary structure content, secondary structural element boundaries pointin...

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...entative sets of X-ray and NMR protein structures were gathered from a recent release of the PDB databank.8 In correspondence with the goals of the present work, excluded were the protein chains that =-=(1)-=- list only C, atoms, (2) contain no secondary structure assignment made by the authors, (3) contain obviously wrong secondary structure assignments (e.g., with long overlapping segments, unrealistical...