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Citations

3005 Environmental Protection Agency, - S - 1994
2262 Haeberli P, Smithies O: A comprehensive set of sequence analysis programs for the VAX - Devereux - 1984
205 of Housing and Urban Development - Department - 1997
159 A rapid, sensitive method for detection of alkaline phosphatase-conjugated antiantibody on Western blots. - Blake, Johnston, et al. - 1984
133 Critical review of variables used to define effects of fines in redds of large salmonids. - Chapman - 1988 (Show Context)

Citation Context

...iment movement.s3. Improved Substrate Size Distribution: High proportions of fine sand in spawning gravel and in pools are linked withsdecreased fish populations and decreased spawning success (e.g., =-=Chapman 1988-=-, PWA 1994).s3a. Substrate sediments< 0.85 mms<14% bysvolumesMeasured in potential spawning gravels and evaluated as long-term runningsaverages; addresses embryo development and emergence. Reference: ...

77 Regional Water Quality Control Board. Klamath River total maximum daily loads. 2007. http://www.waterboards. ca.gov/northcoast/water_issues/programs/tmdls/klamath_river/. Accessed September 8 - Coast - 2009
59 The volume of fine sediment in pools: An index of sediment supply in gravel-bed streams - Lisle, Hilton - 1992 (Show Context)

Citation Context

... of pools greater than 15 feet depth and increase insmaximum depth of individual pools within reaches tracked over time.s2b. Tributary Pool Recovery-V* 0.21swesternstribs;s0.10 otherstribssReference: =-=Lisle and Hilton 1992-=-, Hilton and Lisle 1993, Knopp 1993, Lisle,spers. comm. 1998. Western tribs are those subwatershed areas inspredominantly “fines-rich” geology west of the mainstem South Fork TrinitysRiver.s2c. Increa...

57 Rapid evaluation of sediment budgets. - Reid, Dunne - 1996
56 MxiD, an outer membrane protein necessary for the secretion of the Shigella flexneri lpa invasins. Mol Microbiol 7:59–68 - Allaoui, PJ, et al. - 1993
55 Channel response to sediment wave propogation and movement, - Madej, Ozaki - 1996
50 Protein secretion in Pseudomonas aeruginosa: characterization of seven xcp genes and processing of secretory apparatus components by prepilin peptidase - Bally - 1992
46 Phage shock protein, a stress protein of Escherichia coli - Brissette, Russell, et al. - 1990
44 Defining acceptable biological status by comparing with reference conditions. - HUGHES - 1995
44 Regional Reference sites: a method for assessing stream potential.” - Hughes, Larsen, et al. - 1986
35 Historical decline and current status of coho salmon in California. - Brown, Moyle, et al. - 1994
33 Nucleotide sequence and genetic organization of the Bacillus subtilis comG operon - Albano, Breitling, et al. - 1989
28 Wedron and Mason Groups: Lithostratigraphic reclassification of deposits - Hansel, Johnson - 1996 (Show Context)

Citation Context

...ss than 6 m (20 ft.) of the Illinoian age Glasford Formation.sOver the remainder of the site, surficial materials are mapped as greater than 6 m (20 ft.) of Glasford Formation (Vandalia Till Member) (=-=Hansel and Johnson 1996-=-).sThe Cahokia Formation consists primarily of poorly-sorted sand, silt, or clay with local lenses of sand and gravel, and the Glasford Formation consists primarily of glacial tills and intercalated o...

27 Reassortment of pilin genes in Neisseria gonorrhoeae occurs by two distinct mechanisms. Nature 338:651–652 - Gibbs, Reimann, et al. - 1989
26 Assessment of cumulative effects on salmonid habitat: some suggested parameters and target conditions - Peterson, Hendry, et al. - 1992
25 Rhythmic Spacing and Origin of Pools and Riffles - Keller, Melhorn - 1978
24 Measuring the Fraction of Pool Volume Filled with Fine Sediment - Hilton, Lisle - 1993 (Show Context)

Citation Context

...15 feet depth and increase insmaximum depth of individual pools within reaches tracked over time.s2b. Tributary Pool Recovery-V* 0.21swesternstribs;s0.10 otherstribssReference: Lisle and Hilton 1992, =-=Hilton and Lisle 1993-=-, Knopp 1993, Lisle,spers. comm. 1998. Western tribs are those subwatershed areas inspredominantly “fines-rich” geology west of the mainstem South Fork TrinitysRiver.s2c. Increased channelscomplexity:...

20 of Environmental Resources, - Dept - 1975
20 Methods for Inventory and Environmental Risk Assessment of Road Drainage Crossings," - Flanagan, Furniss, et al. - 1998
20 Nutritional profile of Neisseria gonorrhoeae, Neisseria meningitidis and Neisseria lactamica in chemically defined media and the use of growth requirements for gonococcal typing - Catlin - 1973 (Show Context)

Citation Context

...had been pre-incubatedsovernight in 5% CO2 (Koomey and Falkow, 1987). For exami-snation of secreted proteins, chemically defined media contain-sing free amino acids were used as described previouslys(=-=Catlin, 1973-=-). E. coil HB101 (Betheseda Research Labo-sratories) was used in plasmid cloning experiments, andsrecombinant strains were grown at 37°C in Luria-Bertanis(LB) medium supplemented with the appropriate ...

17 Yachats-Blodgett watershed analysis - Service - 1997
14 Ecoregions of Oregon. [Color poster with map, descriptive text, summary tables, and photographs]. - Thorson - 2003 (Show Context)

Citation Context

...designating a specific region where referencessites are desired.sSince the early 90’s the ODEQ has used both ecoregion and basin as study areasscales.sWe have relied on Omernik’s Level III ecoregion (=-=Thorson et al, 2003-=-; Omernik, 1986)sas a framework in which to establish reference sites. The use of ecoregion as an appropriatesgeographic framework has been suggested (Bryce et al, 1999; Hughes and Larsen, 1988) andsu...

14 Secretion and membrane integration of a filamentous phage-encoded morphogenetic protein - Brissette, Russel - 1990
12 Ecoregions: a geographic framework to guide risk characterization and ecosystem management. Environmental Practice 1:141–155. - Bryce, Omernik, et al. - 1999 (Show Context)

Citation Context

...mernik’s Level III ecoregion (Thorson et al, 2003; Omernik, 1986)sas a framework in which to establish reference sites. The use of ecoregion as an appropriatesgeographic framework has been suggested (=-=Bryce et al, 1999-=-; Hughes and Larsen, 1988) andsused in a number of state and EPA programs (Griffith, 1999). This allows for an appropriatesdistribution of sites across both state and watershed boundaries. Ecoregions ...

12 Spawning bed sedimentation studies in north California streams - Burns - 1970
9 Ecoregions, watersheds, basins, and HUCs: how state and federal agencies frame water quality - GriMith, Omernik, et al. - 1999
9 Ecoregions: an approach to surface water protection - Hughes, Larsen - 1988 (Show Context)

Citation Context

...ecoregion (Thorson et al, 2003; Omernik, 1986)sas a framework in which to establish reference sites. The use of ecoregion as an appropriatesgeographic framework has been suggested (Bryce et al, 1999; =-=Hughes and Larsen, 1988-=-) andsused in a number of state and EPA programs (Griffith, 1999). This allows for an appropriatesdistribution of sites across both state and watershed boundaries. Ecoregions are recognized as asconsi...

9 Long-term on-site and off-site effects of logging and erosion in the Redwood Creek basin - Haggans, Weaver, et al. - 1986 (Show Context)

Citation Context

...s are derived from field work in the NorthsCoastal Region by Weaver and Hagans (1994). For example, Hagans (1998, pers. comm.) estimates that about 95%sof stream crossing diversions are controllable (=-=Hagans, et al., 1986-=-). Estimates of controllable percentage of harvestsand other factors are based on staff judgment and experience. Estimates of natural background loading levels aresprovided for different mass wasting ...

9 Erosion on logging roads in northwestern California: How much is avoidable - McCASHION, RICE - 1983
9 Signal sequence processing is required for the assembly of Lamb trimers - Carlson, Silhavy - 1993 (Show Context)

Citation Context

...es induce the pspsoperon when expressed in E. coli (Russel and Kasmier-sczak, 1993; Possot et aL, 1992). As this response can bestriggered by other membrane-perturbing stimuli (Brissetteset aL, 1990; =-=Carlson and Silhavy, 1993-=-), it was proposedsthat the homologues might activate psp expression in assimilar manner (Russel and Kazmierczak, 1993). Cluessas to the functions of the homologues are most clearlysfound in the filam...

7 Variations in low-water streambed elevations at selected stream-gaging stations - Hickey - 1969
6 The effects of forest management on erosion and soil productivity - Elliot, Page-Dumroese, et al. - 1999
5 Bedrock geology of Illinois: Illinois State Geological Survey, Illinois Map 14, - Kolata, compiler - 2005 (Show Context)

Citation Context

...ively blocked any overland drainage from the western portion of the site into the north-south ditch. Geology The uppermost bedrock unit in the project area is the Pennsylvanian-age Mattoon Formation (=-=Kolata 2005-=-).sThe Mattoon Formation is described as a complex unit of thin limestones, coals, shales, and sandstones (Willman et al. 1975).sDepth to bedrock in the project area is mapped as less than 7.6 m (25 f...

4 Corps of Engineers wetlands delineation manual. US Army Engineer Waterways experiment Station - Laboratory - 1987 (Show Context)

Citation Context

...be used to compare the pre- and post-construction hydrology of the site, to determine the impact of hydrologic alterations on the area, and to measure the duration of wetland hydrology (Environmental =-=Laboratory 1987-=-).sSUMMARY The following factors indicate that the potential for wetland preservation and creation at this compensation site is moderate: ! Hydrologic monitoring and visual observations in Spring 2006...

4 Sediment Discharge in Trinity River Basin, California - Knott - 1974 (Show Context)

Citation Context

... well as geomorphic changes and damage tosfishery habitat following the 1964 storm. Two USGS investigations provide estimates for sediment discharge fromsthe South Fork basin for the period 1957-1970(=-=Knott 1974-=-, Hawley and Jones 1969). A 1972 report by the USDAsSoil Conservation Service (USDA River Basin Planning Staff, 1972) included sediment source estimates for fivesNorthern California coastal river syst...

4 Sediment budget for the Grouse Creek Basin, Humboldt County - Raines, Kelsey - 1991 (Show Context)

Citation Context

... a 50-foot high delta following the 1964 floods(Matthews 1998). These results are not surprising given that they appear to be among the highest sedimentproducing subwatersheds in the basin (PWA 1994, =-=Raines and Kelsey 1991-=-).sThe USFS is currently engaged in monitoring selected “response” reaches--those that have exhibited significantschanges in the past and are expected to continue to reflect continued downstream movem...

4 South Fork Trinity River Sediment Source Analysis. Report to Tetra Tech - Raines - 1998 (Show Context)

Citation Context

...rate for sites on the west side of the basin (Lewis andsRice analysis unit 1) and another for the east side (Lewis and Rice analysis unit 2) based on their data. The datasfrom Lewis and Rie (1989, in =-=Raines 1998-=-) do not distinguish between harvest method, nor is delivery of erosion tosstreams explicitly stated. To be conservative, erosion rates were doubled for the period 1960 to 1975 to account forsless sen...

4 Protein secretion by gram-negative bacteria - d'Enfert, Reyss, et al. - 1989
3 Glacial Drift - Piskin, Bergstrom - 1967 (Show Context)

Citation Context

... a NNE/SSW-trending bedrock valley with an elevation between 137 to 152 m (450 and 500 ft.) (Herzog et al. 1994). Surficial materials in the project area are mapped as less than 7.6 m (25 ft.) thick (=-=Piskin and Bergstrom 1975-=-).sImmediately adjacent to Green Creek, surficial materials are mapped as less than 6 m (20 ft.) of the recent Cahokia Formation alluvium overlying less than 6 m (20 ft.) of the Illinoian age Glasford...

3 Evaluationof salmon and steelhead spawning habitat quality in the South Fork Trinity River Basin - Borok, Jong - 1997 (Show Context)

Citation Context

...ations for the cold water fishery, including sedimented or armored spawningsriffles, impaired invertebrate production, and limited pool habitat (CH2MHill 1985, in Haskins and Irizarry 1988,sPWA 1994, =-=Borok and Jong 1997-=-).sSpecific Problem Statementss1. Decline in Fish PopulationssThis statement relates directly to the COLD beneficial use. Although the populations of spring and fall-run chinook,swinter and summer ste...

3 Action plan for the restoration of the South Fork Trinity River watershed and its fisheries. Prepared for U.S.Bureau of Redamation and the Trinity River Task Force. Contract No - Associates - 1994
3 Influence of climate on progressive hillslope failure in Redwood Creek Valley, Northwest California, Open-file report 83-259 - Swanston, Ziemer, et al. - 1983
2 Manual of Oregon Actual Vegetation. Idaho Cooperative Fish and Wildlife Research Unit - Kagan, Caicco - 1992
2 A king salmon spawning survey of the South Fork Trinity River - LaFaunce - 1967 (Show Context)

Citation Context

...stimated at over 3,300sin 1963. Later counts estimated 500 or fewer fish in the late 1980s, with somewhat higher numbers documentedsonly in the last few years (as high as 1,835 in 1996) (Healey 1963, =-=LaFaunce 1967-=-, LaFaunce 1975, Jong & Millss1994, PWA 1994, Jong 1997). Other species, including steelhead, also declined in number, although data are moresscarce.sLife Cycle and Habitat RequirementssSalmonids are ...

2 Version - Service
1 Human Disturbance Index Reach (HDIreach) Checklist Procedures. Oregon Dept. Of Environmental Quality, Watershed Assessment Section - Drake - 2003 (Show Context)

Citation Context

...sHuman Disturbance Index Reach (HDIreach) - The reach level human disturbance scoring andsranking method was developed as an objective procedure for scoring and ranking all potentialsreference sites (=-=Drake, 2003-=-).sIt consists of a site level assessment that is performed during asreconnaissance or sampling visit. The reach level checklist is a tool intended to document thessignificant human disturbance activi...

1 Road Density Files. Website: edc.usgs.gov/products/map/dlg.html - USGS - 2001
1 map scale 1:500,000 - Herzog, Stiff, et al. - 1994 (Show Context)

Citation Context

...ck in the project area is mapped as less than 7.6 m (25 ft.), and the site is situated along the SE wall of a NNE/SSW-trending bedrock valley with an elevation between 137 to 152 m (450 and 500 ft.) (=-=Herzog et al. 1994-=-). Surficial materials in the project area are mapped as less than 7.6 m (25 ft.) thick (Piskin and Bergstrom 1975).sImmediately adjacent to Green Creek, surficial materials are mapped as less than 6 ...

1 Natural History Survey, 2005a, Mitigation Site Assessment, IL 32/33, unpublished contract report presented to the Illinois Department of Transportation, Illinois Natural History Survey - Illinois
1 Natural History Survey, 2005b, Mitigation Site Assessment, IL 32/33 - supplement to original report, unpublished contract report presented to the Illinois Department of Transportation, Illinois Natural History Survey - Illinois
1 Geological Survey, 2001, Illinois Natural Resources Geospatial Data Clearinghouse, Effingham North SW Digital Orthophoto Quarter Quadrangle - State - 1998
1 25th 2006, Supervisory Hydrologist - LaTour
1 2006, National Resource Conservation Service, Climate Analysis for Wetlands by County, available online at http://www.wcc.nrcs.usda.gov/climate/wetlands.html - Water, Center
1 Fucciolo 2005, Initial Site Evaluation, Proposed Wetland Compensation Site - Plankell, Shofner, et al.
1 21st 2006, correspondence to IDOT outlining conceptual site design plan - Robinson
1 Soil Survey of Effingham County - S - 1991
1 of Agriculture, 1995a, Hydric Soils of Illinois (revised December 15 - Department - 1995
1 of Agriculture, 1995b, County List of Hydric Soils - Department
1 of Agriculture, 1995c, County List of Soils with Hydric - Department
1 of Agriculture, 1998, Soil Survey of Clay County - Department
1 National Wetlands Inventory Map, Effingham North Quadrangle, Illinois, map scale 1:24,000, 1 sheet, available for download online at http://www.isgs.uiuc.edu/nsdihome - Fish, Service - 1987
1 map scale 1:24,000. 1 sheet, available for download online at http://www.isgs.uiuc.edu/nsdihome - Survey
1 2006, mean gauge height at Little Wabash River near Effingham - Survey
1 A river history: conversations with long-term residents of the lower South Fork Trinity River - Berol - 1995 (Show Context)

Citation Context

...umeric Targets - 18s(the number of returning spawners) was greater than 10,000 fish (Healey 1963, LaFaunce 1967). This is consistentswith anecdotal observations of large numbers of fish in the river (=-=Berol 1995-=-). The December 1955 flood probablysalso affected the fish population temporarily; an aerial redd count in 1958 noted only 101 spring chinook reddss(LaFaunce 1967, citing USFWS 1960). However, large s...

1 Technical documentation for SEDMOD: Boise Cascade Road Erosion/Delivery Model - Corp - 1998
1 Model steelhead stream demonstration project plan final report - Fish, Game, et al. - 1985
1 Life history, distribution, run size, and harvest of spring chinook salmon in the South Fork Trinity R VII, Annual report, Trinity River Basin salmon and steelhead monitoring project, 1994-1995 season - Dean - 1996 (Show Context)

Citation Context

...he SPAWN, COLD andsMIGR beneficial uses, as well as the potential for sediment and settleable material to adversely affect pool habitat.sCDFG’s survey of the spring chinook in the basin in 1994-1995 (=-=Dean 1996-=-a) indicated that many of the fish weresholding in 16 pools, with only one of these located downstream of Hyampom and none upstream of Forest Glen.sLow water levels and high temperatures appeared to l...

1 Season, Snorkel and Redd Surveys of Spring Chinook Salmon in the South Fork Trinity River Basin. prep. for Huber, Harpham and Assoc - Dean - 1995
1 Risk analysis after fire with WEPP - Elliot, Robichaud - 1998 (Show Context)

Citation Context

...Acres of burn area within eachssub-area were multiplied by a conservative erosion rate of 5.2 tons/ac for one year based on soil loss simulations forsa high disturbance fire (Elliot and others, 1996; =-=Elliot and Robichaud, 1998-=-, in Raines 1998).sShasta-Trinity vegetation layers allowed identification of non-timbered areas in grass and oak woodland andschaparral acreage by sub-basin. The erosion rate for grass and oak woodla...

1 President’s Forest Plan Record of Decision (fix reference - FSEISROD - 1994
1 Water temperatures in the South Fork Trinity River watershed - Farber, Ranken, et al. - 1998
1 Fork Trinity River/Hayfork Creek Sediment TMDLs, December 1998 References - 60 - South - 1994
1 Response of road-stream crossings tolarge flood events in - Furniss, Ledwish, et al. - 1998
1 A holistic appraisal of cumulative watershed effects on waterhsed condition and fisheries - Haskins, Irizarry - 1988 (Show Context)

Citation Context

...gsgravels. This has resulted in limitations for the cold water fishery, including sedimented or armored spawningsriffles, impaired invertebrate production, and limited pool habitat (CH2MHill 1985, in =-=Haskins and Irizarry 1988-=-,sPWA 1994, Borok and Jong 1997).sSpecific Problem Statementss1. Decline in Fish PopulationssThis statement relates directly to the COLD beneficial use. Although the populations of spring and fall-run...

1 Salmon surveys, South Fork of the Trinity River. Memo to Fish Management Supervisor, Region 1, CDFG. 12/10/63, 3 p. (Available at Trinity County library - Healey - 1963 (Show Context)

Citation Context

...awners were estimated at over 3,300sin 1963. Later counts estimated 500 or fewer fish in the late 1980s, with somewhat higher numbers documentedsonly in the last few years (as high as 1,835 in 1996) (=-=Healey 1963-=-, LaFaunce 1967, LaFaunce 1975, Jong & Millss1994, PWA 1994, Jong 1997). Other species, including steelhead, also declined in number, although data are moresscarce.sLife Cycle and Habitat Requirements...

1 Sediment yield of coastal basins in northern California 1958-1964. Menlo Park, CA: U.s. Geological Survey, Water Resources Division, prepared in cooperation with the Calif. Dept. of Water Resources - Hawley, Jones - 1969 (Show Context)

Citation Context

...morphic changes and damage tosfishery habitat following the 1964 storm. Two USGS investigations provide estimates for sediment discharge fromsthe South Fork basin for the period 1957-1970(Knott 1974, =-=Hawley and Jones 1969-=-). A 1972 report by the USDAsSoil Conservation Service (USDA River Basin Planning Staff, 1972) included sediment source estimates for fivesNorthern California coastal river systems, including the Trin...

1 Results of McNeil sediment sampling, South Fork Trinity River Basin - Jong - 1995 (Show Context)

Citation Context

...d 5% average for mainstem). Methods may not be directly comparable. Other data points are reported by CDFG, and are assumed to be collected under consistent CDFG protocol. Sources: Borok & Jong 1997, =-=Jong 1995-=-, USFS 1990 Moreover, these hillslope and road-related sediment production sources effectively represent potential orstemporarily modified existing impairments. Measures of water conditions do not ref...

1 30 letter from CDFG Arcata to Dave Cross - Jong - 1997 (Show Context)

Citation Context

...l spawning gravels and evaluated as long-term runningsaverages; addresses embryo development and emergence. Reference: Burnss1970, Cederholm et. al 1981, Chapman 1988, Peterson et. al 1992, Borok ands=-=Jong 1997-=-.s4. Decreased Sediment Delivery: Addresses the need to achieve adequate watershed conditions to ensure adequate water qualitysand to reduce temporarily “controlled” water quality impairments in order...

1 Summary of Findings: Tributary sediment study, South Fork Trinity River - Llanos - 1998 (Show Context)

Citation Context

...andsKelsey 1991). The USFS conducted a landslide inventory of the lower South Fork basin for its Watershed Analysiss(USFS 1998b) and also conducted a basinwide assessment of existing channel storage (=-=Llanos 1998-=-).sThe Grouse Creek sediment budget (Raines and Kelsey 1991), which was developed for the Six Rivers NationalsForest, covered the period from 1960 to 1989 and reported a sediment production rate of 1,...

1 Rivers National Forest - Six - 1998
1 Summary and analysis of geomorphic data for the South Fork Trinity River. Prepared for Tetra Tech - Matthews
1 South Fork Trinity River spring-run king salmon spawning stock survey. Memo to Don LaFaunc (available at Trinity County library, Weaverville - Rogers - 1971
1 Spring-run king salmon survey on the South Fork Trinity River - Rogers - 1974
1 Butter Creek Watershed Analysis, Hayfork Ranger District, Shasta-Trinity National Forests, Klamath Province. December 10. 182 p. plus appendices - Service - 1994
1 South Fork Trinity River watershed and fisheries monitoring 1990 progress repo National Forest - Service - 1990
1 1998 progress report for South Fork Trinity River watershed & fisheries moni (Shasta-Trinity National Forest). Trinity - Service, Bureau - 1991
1 Management and cooperating agencies - Service - 1994
1 Management Plan. 1998a. East Fork/Smoky Cre South Fork Trinity River. Shasta Trinity National Forest, Hayfork Ranger District - Service
1 River Watershed Analysis (Draft - River
1 and related resources, north coastal area of California and portions of southern Oregon - Water
1 related resources, north coastal area of California and portio Main report - S
1 fork Creek Sediment TMDLs Comment Summary - Service
1 for conducting watershed analysis. Version 3.0 - Weaver, Hagans - 1998
1 for forest and ranch roads: a guide for planning, designing, constructing, reconstructing, maintaining and closing wildland roads. Prepared for the Mendocino County Resource Conservation District - Wilson, Mills - 1992
1 specific definitions. The designation (1,2,3, etc.) of the 1998 position of stream segments in the drainage basin network. For example, a first order stream is the smallest, unbranched, perennial tributary which terminates at the upper point. A second ord - South - 1998
1 Characterization of the pi/F-pilD pilus assembly locus of Neisseria gonorrhoeae - Freitag, Seifert, et al. - 1995
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