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Probe level analysis of . . . (2008)
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Correct Errors
Monitor Changes
by Richard Ellis Kennedy
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8731
Controlling the false discovery rate: a practical and powerful approach to multiple testing
- Benjamini, Hochberg - 1995
1237
Applied multivariate statistical analysis
- RA, DW - 1992
1090
The control of the false discovery rate in multiple testing under dependency. Ann stat
- Benjamini, Yekutieli
1019
Bioconductor: open software development for computational biology and bioinformatics. Genome biology
- Gentleman, Carey, et al.
852
Exploration, normalization, and summaries of high density oligonucleotide array probe level data
- Irizarry, Hobbs, et al.
794
T: A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
- Bolstad, Irizarry, et al.
774
Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection
- Li, Wong - 2001
546
Functional discovery via a compendium of expression profiles
- Hughes, Marton, et al.
491
Empirical Bayes analysis of a microarray experiment
- Efron, Tibshirani, et al. - 2001
490
A Bayesian framework for the analysis of microarray expression data: Regularized t-test and statistical inferences of gene changes
- Baldi, Long - 2001
435
Statistical methods for identifying differentially expressed genes in replicated cDNA microarray experiments. Statistica Sinica 12
- Dudoit, Yang, et al. - 2002
432
Matrix Algebra from a Statistician’s Perspective.
- Harville - 1997
375
Kronecker Products and Matrix Calculus with Applications. Ellis Horwood Limited,
- Graham - 1981
358
Analysis of variance for gene expression microarray data
- Kerr, Martin, et al. - 2000
352
The use of ranks to avoid the assumption of normality implicit in the analysis of variance
- Friedman - 1937
314
Understanding robust and exploratory data analysis.
- Hoaglin, Mosteller, et al. - 1983
308
High density synthetic oligonucleotide arrays
- Lipshutz, Fodor, et al. - 1999
303
Gene-expression profiles in hereditary breast cancer.
- Hedenfalk, Duggan, et al. - 2001
254
Fundamentals of experimental design for cDNA microarrays. Nat Genet 32 Suppl
- Churchill - 2002
212
Robust estimators for expression analysis,”
- Hubbell, Liu, et al. - 2002
209
Replicated microarray data.
- Lonnstedt, Speed - 2002
193
Statistical tests for differential expression in cDNA microarray experiments. Genome biology
- Cui, Churchill
192
Microarray data analysis: From disarray to consolidation and consensus.
- Allison, Cui, et al. - 2006
186
Applied Mixed Models in Medicine.
- Brown, Prescott - 2006
173
Expression profiling using cDNA microarrays
- DUGGAN, BITTNER, et al. - 1999
141
A benchmark for affymetrix genechip expression measures.,
- Cope, Irizarry, et al. - 2004
129
Statistical design and the analysis of gene expression microarray data
- Kerr, Churchill - 2001
115
On parametric empirical Bayes methods for comparing multiple groups using replicated gene expression profiles. Statistics in Medicine.
- Kendziorski, Newton, et al. - 2003
113
Analysis of high density expression microarrays with signed-rank call algorithms.
- Liu - 2002
111
Improved statistical tests for differential gene expression by shrinking variance components estimates.
- Cui, Hwang, et al. - 2005
98
Probability and measure. Wiley Series in Probability and Mathematical Statistics
- Billingsley - 1995
92
Some matrix-variate distribution theory: notational considerations and a Bayesian application
- DAWID - 1981
85
A systematic statistical linear modeling approach to oligonucleotide array experiments.
- Chu, Weir, et al. - 2002
78
Fully automatic quantification of microarray image data,
- Jain, Tokuyasu, et al. - 2003
77
Preferred analysis methods for Affymetrix GeneChips revealed by a wholly defined control dataset.
- Choe, Boutros, et al. - 2005
63
Statistical Algorithms Description Document.
- Affymetrix - 2002
61
Local-poolederror test for identifying differentially expressed genes with a small number of replicated microarrays.
- Jain, Thatte, et al. - 2003
52
Potent induction of Arabidopsis thaliana flowering by elevated growth temperature.
- Balasubramanian, Sureshkumar, et al. - 2006
52
The matrix-logarithmic covariance model
- Chiu, Leonard, et al. - 1996
51
Statistical design of reverse dye microarrays,
- Dobbin, Shih, et al. - 2003
45
The MAP kinase substrate MKS1 is a regulator of plant defense responses
- Andreasson, Jenkins, et al. - 2005
39
Affymetrix Microarray Suite User Guide, version 5. Affymetrix:
- Affymetrix - 2001
39
Arabidopsis MAP kinase 4 regulates salicylic acid- and jasmonic acid/ethylene-dependent responses via EDS1 and PAD4
- Brodersen, Petersen, et al. - 2006
36
GeneChip Expression Analysis
- Affymetrix - 2002
36
Assessment of the relationship between signal intensities and transcript concentration for affymetrix genechip(r) arrays
- Chudin, Walker, et al. - 2001
33
Theoretical and experimental comparisons of gene expression indexes for oligonucleotide arrays
- Lemon, Palatini, et al. - 2002
31
WUSCHEL controls meristem function by direct regulation of cytokinininducible response regulators.
- Leibfried, JPC, et al. - 2005
30
Vec and vech operators for matrices, with some uses in Jacobians and multivariate statistics.
- Henderson, Searle - 1979
30
A tractable probabilistic model for Affymetrix probe-level analysis across multiple chips.
- Liu, Milo, et al. - 2005
29
A high performance test of differential gene expression for oligonucleotide arrays
- Lemon, Liyanarachchi, et al. - 2003
27
On the distribution of the roots of certain determinantal equations.
- Hsu - 1939
26
Proof of the conjectures of H. Uhlig on the singular multivariate beta and the jacobian of a certain matrix transformation
- Díaz-García, Gutiérrez - 1997
26
Microarray platforms--comparisons and contrasts.
- Hardiman - 2004
24
The distribution of quadratic forms in a normal system, with applications to the analysis of covariance
- Cochran - 1934
24
S: Alternative mapping of probes to genes for Affymetrix chips.
- Gautier, Moller, et al. - 2004
23
A high-dimensional two sample significance test.
- Dempster - 1958
23
An assessment of recently published gene expression data analyses: reporting experimental design and statistical factors
- Jafari, Azuaje - 2006
22
T.P.: Experimental design and low-level analysis of microarray data.
- Bolstad, Collin, et al. - 2004
21
Wishart and pseudo-Wishart distributions and some applications to shape theory,
- Dıaz-Garcıa, Gutierrez-Jaimez, et al. - 1997
21
Probe-level measurement error improves accuracy in detecting differential gene expression.
- Liu, Milo, et al. - 2006
18
Singular Random Matrix decompositions
- Dı́az-Garćıa, González-Faŕıas
18
Establishing the positive definiteness of the sample covariance matrix
- Dykstra - 1970
17
The non–singularity of generalized sample covariance matrices.
- Eaton, Perlman - 1973
17
Matrix variate distributions, volume 104.
- Gupta, Nagar - 1999
15
Preprocessing high-density oligonucleotide arrays
- Bolstad, Irizarry, et al. - 2005
15
The affymetrix GeneChip platform: an overview. Methods Enzymol.
- DD, Warrington, et al. - 2006
14
A significance test for the separation of two highly multivariate small samples,
- Dempster - 1960
13
Assessing quality of hybridized RNA in Affymetrix GeneChip experiments using mixed-effects models
- Archer, Dumur, et al. - 2006
13
Metabolic network driven analysis of genome-wide transcription data from Aspergillus nidulans. Genome Biol.
- David, Hofmann, et al. - 2006
12
Normality of oligonucleotide microarray data and implications for parametric statistical analyses
- Giles, Kipling - 2003
12
Assessing Differential Gene Expression with Small Sample Sizes in Oligonucleotide Arrays Using a Mean-Variance Model. Biometrics, 63(Article 3).
- Hu, Wright - 2007
11
Combining mouse congenic strains and microarray gene expression analyses to study a complex trait: the NOD model of type 1 diabetes
- Eaves, Wicker, et al. - 2002
11
Comparative analysis of Hox downstream genes in Drosophila
- Hueber, Bezdan, et al. - 2007
11
Rank-invariant resampling based estimation of false discovery rate for analysis of small sample microarray data.
- Jain, Cho, et al. - 2005
11
Including probe-level uncertainty in model-based gene expression clustering.
- Liu, Lin, et al. - 2006
8
Leveraging two-way probe-level block design for identifying differential gene expression with high-density oligonucleotide arrays
- Barrera, Benner, et al. - 2004
8
Analysis issues for gene expression array data
- Lee - 2001
7
Analysis of variance of microarray data
- Ayroles, Gibson - 2006
7
Illumina universal bead arrays.
- Fan - 2006
7
Application of the S-score algorithm for analysis of oligonucleotide microarrays
- Kerns, Zhang, et al. - 2003
6
Matrices with applications in statistics. Wadsworth Statistics/Probability Series
- Graybill - 1983
6
A numerical procedure for finding the positive definite matrix closest to a patterned matrix,
- Hu, Olkin - 1991
5
Note on the Independence of Certain Quadratic Forms
- Craig - 1943
5
DNA microarrays: boundless technology or bound by technology? Guidelines for studies using microarray technology
- Firestein, Pisetsky - 2002
5
Making and using spotted DNA microarrays in an academic core laboratory
- Hager - 2006
5
Block Kronecker products and the vecb operator
- Koning, Neudecker, et al. - 1991
5
Probe-level linear model fitting and mixture modeling results in high accuracy detection of differential gene expression
- Lemieux - 2006
4
SScore: an R package for detecting differential gene expression without gene expression summaries
- Kennedy, Kerns, et al. - 2006
3
A verification protocol for the probe sequences of Affymetrix genome arrays reveals high probe accuracy for studies in mouse, human and rat
- Alberts, Terpstra, et al. - 2007
3
Comparison of Li-Wong and loglinear mixed models for the statistical analysis of oligonucleotide arrays
- Chu, Weir, et al. - 2004
3
Empirical validation of the S-Score algorithm in the analysis of gene expression data
- Kennedy, Archer, et al. - 2006
3
On the mutual independence of certain statistics
- Khatri - 1959
2
Matrix algebra, volume 1
- Abadir, Magnus - 2005
2
On the robustness of least squares procedures in regression models
- Ghosh, Sinha - 1980
2
A note on Mitra’s paper “A density-free approach to the matrix variate beta distribution
- Khatri - 1970
2
A note on estimating eigenvalues of scale matrix of the multivariate Fdistribution
- Konno - 1991
1
Affymetrix R© GeneChip R© Operating Software User’s Guide. Affymetrix
- Affymetrix - 2004
1
Expression profiling methods used in drug abuse research
- Gebicke-Haerter - 2005
1
Microarray platforms: introduction and application to neurobiology
- Karsten, Kudo, et al. - 2004
1
A note on the existence of maximum likelihood estimates for Gaussian-inverted Wishart models
- Le, Sun, et al. - 1998