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Knowledge-based protein secondary structure assignment

by Dmitrij Frishman, Patrick Argos - Proteins , 1995
"... ABSTRACT We have developed an auto-matic algorithm STRIDE for protein secondary structure assignment from atomic coordinates based on the combined use of hydrogen bond energy and statistically derived backbone tor-sional angle information. Parameters of the pattern recognition procedure were optimiz ..."
Abstract - Cited by 324 (2 self) - Add to MetaCart
data sample, re-spectively, in greater agreement with the spe-cific residue-by-residue definitions provided by the discoverers of the structures while in 11 % of the chains, the assignments are the same. STRIDE delineates every 11 th helix and every 32nd strand more in accord with published assignments

hep-th/0105095 Super D-Helix

by Jin-ho Cho, Phillial Oh , 2001
"... We study ‘Myers effect ’ for a bunch of D1-branes with IIB superstrings moving in one direction along the branes. We show that the ‘blown-up ’ configuration is the helical D1-brane, which is self-supported from collapse by the axial momentum flow. The tilting angle of the helix is determined by the ..."
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We study ‘Myers effect ’ for a bunch of D1-branes with IIB superstrings moving in one direction along the branes. We show that the ‘blown-up ’ configuration is the helical D1-brane, which is self-supported from collapse by the axial momentum flow. The tilting angle of the helix is determined

THE TRIPLE HELIX ASSOCIATION NEWSLETTER

by unknown authors , 2012
"... complete the on-line application form, and make your payment. You will then: Receive a certificate of membership. Attend, participate, and vote at the THA General Assembly. Become eligible to join THA Governing Bodies. Receive fast track review and priority publication of THA members ’ submi ..."
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’ submissions to the TH Journal (to be launched soon). Join the Triple Helix Association (THA) We would like to thank our readers for their interest and the very positive inputs for our inaugural issue of Hélice. Feedback indicates that Hélice offers a lively platform for interaction between scholars

Orbital dynamics in the Tevatron double helix.

by Leo Mtciielotti
"... A krv fcatuw of the ‘I‘euatron upgrade is the placement of proton and anti-proton bunches on the branrhrs of a double helix which winds around thP currrnt ~1~~s~~ ~ orbit. Elrrtrostatir wparators will transfer the bunches on and off thr double hrlix so that they cxpcrirnce hmd-on collisions only at ..."
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A krv fcatuw of the ‘I‘euatron upgrade is the placement of proton and anti-proton bunches on the branrhrs of a double helix which winds around thP currrnt ~1~~s~~ ~ orbit. Elrrtrostatir wparators will transfer the bunches on and off thr double hrlix so that they cxpcrirnce hmd-on collisions only

Dec2 in initial TH2 lineage commitment

by Xuexian O. Yang, Pornpimon Angkasekwinai, Jinfang Zhu, Juan Peng, Roza Nurieva, Xikui Liu, Yeonseok Chung, Seon Hee Chang, Bing Sun, Chen Dong
"... for the basic helix-loop-helix transcription factor ..."
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for the basic helix-loop-helix transcription factor

From the Double Helix to Genomic Medicine

by unknown authors
"... The monumental contribution of Watson and Crick—proposing the structure of DNA—is being celebrated this spring on the 50th anniversary of their classic publica-tion in Nature (1). Expressed simply, clearly, and logically, their analysis was a signal event in the history of science. In the five decad ..."
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The monumental contribution of Watson and Crick—proposing the structure of DNA—is being celebrated this spring on the 50th anniversary of their classic publica-tion in Nature (1). Expressed simply, clearly, and logically, their analysis was a signal event in the history of science. In the five

Helix Formation and Folding in -Peptides and Their Vinylogues

by Carsten Baldauf
"... Dedicated to Professor Dr. Dieter Seebach on the occasion of his 65th birthday A complete overview of all possible periodic structures with characteristic H-bonding patterns is provided for oligomers composed of -amino acids (-peptides) and their vinylogues by a systematic conformational search on h ..."
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Dedicated to Professor Dr. Dieter Seebach on the occasion of his 65th birthday A complete overview of all possible periodic structures with characteristic H-bonding patterns is provided for oligomers composed of -amino acids (-peptides) and their vinylogues by a systematic conformational search

THE ROLE OF TRIPLE HELIX ORGANIZATIONS IN UNIVERSITY-INDUSTRY RELATIONSHIPS

by Manuel Fernández-esquinas, Carmen Merchán-hernández, Leticia Rodríguez-brey, Oihana Valmaseda-andia
"... Triple Helix dynamics have emerged together with a group of specialized organizations aimed at creating networking and consensus spaces for different actors. Technology transfer offices (TTO), science and technology parks and governmental innovation agencies are some of the main Tripe Helix (TH) org ..."
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Triple Helix dynamics have emerged together with a group of specialized organizations aimed at creating networking and consensus spaces for different actors. Technology transfer offices (TTO), science and technology parks and governmental innovation agencies are some of the main Tripe Helix (TH

Three Force Fields’ Views of the 310 Helix

by Kalliopi K. Patapati, Nicholas M. Glykos - Biophys. J. 2011
"... n th pro leve R s pl uctu roi ding field- a ch structure, three popular biomolecular force fields give structure for its N-terminal part, with a highly disordered analyses performed, and compare the results obtained referred to as the CHARMM, OPLS, and AMBER force fields. From the The peptides were ..."
Abstract - Cited by 6 (3 self) - Add to MetaCart
n th pro leve R s pl uctu roi ding field- a ch structure, three popular biomolecular force fields give structure for its N-terminal part, with a highly disordered analyses performed, and compare the results obtained referred to as the CHARMM, OPLS, and AMBER force fields. From the The peptides were

Helix-Formation and Folding as Studied in Generalized-Ensemble Simulations

by Nelson A. Alves, Ulrich H. E. Hansmann , 2003
"... Studying simple artificial peptides, we show that recently developed simulation techniques enable efficient investigations of secondary structure formation and folding in small peptides. Besides questions of sex and aging that capture not only the interest of Dietrich Stauffer [1], whose 60th birthd ..."
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Studying simple artificial peptides, we show that recently developed simulation techniques enable efficient investigations of secondary structure formation and folding in small peptides. Besides questions of sex and aging that capture not only the interest of Dietrich Stauffer [1], whose 60th
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