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TABLE 2. Induction of genes in the OxyR regulon of Escherichia coli MG1655 after exposure to H2O2

in unknown title
by unknown authors 2003

TABLE VI ERROR RATES ON THE REGULON DATASETS

in Segment and combine approach for biological sequence classification
by Pierre Geurts, Antia Blanco Cuesta, Louis Wehenkel 2005
Cited by 2

Table 1: Regulons of Zn cluster proteins.

in A Highly Scalable Algorithm for the Extraction of cis-Regulatory Regions
by Alexandra M. Carvalho, Ana T. Freitas, Arlindo L. Oliveira Marie-france Sagot

Table 5: Regulons of Zn cluster proteins.

in Algorithms for Molecular Biology Research EXMOTIF: efficient structured motif extraction
by Yongqiang Zhang, Mohammed J Zaki, Yongqiang Zhang, Mohammed J Zaki 2006
"... In PAGE 16: ... There are 11 binding sites listed for the Zn cluster, 3 of which are simple motifs. The remaining 8 are structured, as shown in Table5 . For the evaluation, we first form several structured motif templates according to the conserved features in the binding sites.... In PAGE 17: ...ttp://www.almob.org/content/1/1/21 using the weighted support (which is also applicable for the repeated structured motif identification problem). As shown in Table5 , we can successfully predict GAL4, GAL4 chips, LEU3, PPR1 and PUT3 with the highest rank. CAT8 and LYS also have high ranks.... ..."

Table 1: Regulons of Zn cluster proteins.

in A highly scalable algorithm for the extraction of cis-regulatory regions
by Arlindo L. Oliveira , Marie-france Sagot, et al.

Table 4. Enrichment of regulons for genes within COG functional categories

in unknown title
by unknown authors 2005
"... In PAGE 6: ...Table4 along with their corresponding TFs. Of the 13 known DNA motifs in the McCue et al.... ..."

Table 5. Haemophilus influenzae TUs Predicted to Belong to the CRP Regulon

in unknown title
by unknown authors
"... In PAGE 8: ... For both categories, predicted CRP sites, their scores, and locations relative to the transcription start are tabulated in Table 6 (E. coli) and Table5 (H. influenzae).... ..."

Table 6. Escherichia coli TUs Predicted to Belong to the CRP Regulon

in unknown title
by unknown authors
"... In PAGE 8: ...icted 30 and 21 TUs in E. coli and H. influenzae, re- spectively. For both categories, predicted CRP sites, their scores, and locations relative to the transcription start are tabulated in Table6 (E. coli) and Table 5 (H.... In PAGE 15: ...owever, this is a weak site (6.2 bits). In this study, we detected another strong CRP site for this operon (17.25 bits; Table6 ). Another interesting case is the E.... In PAGE 15: ... In our study, we identified three CRP-binding sites upstream of fucA (Fig. 7; Table6 ), providing fur- ther evidence for previous observations. In E.... ..."

Table 7. Haemophilus influenzae TUs Predicted to Belong to the FNR Regulon

in unknown title
by unknown authors
"... In PAGE 10: ...ite. Category IIA contains 0 and 2 TUs in E. coli and H. influenzae, respectively. For both categories, predicted FNR sites, their scores, and distances relative to the transcription start are tabulated in Table7 (H. influen- zae) and Table 8 (E.... ..."

Table 8. Escherichia coli TUs Predicted to Belong to the FNR Regulon

in unknown title
by unknown authors
"... In PAGE 10: ... For both categories, predicted FNR sites, their scores, and distances relative to the transcription start are tabulated in Table 7 (H. influen- zae) and Table8 (E. coli).... ..."
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