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368
miRBase: microRNA sequences, targets and gene nomenclature
- Nucleic Acids Res
, 2006
"... nomenclature ..."
Gene Nomenclature System for Rice
, 2008
"... ative has revised the gene nomenclature system for rice (Oryza) to take advantage of the completion of the rice genome sequence and the emergence of new methods for detecting, characterizing, and describing genes in the biological community. This paper outlines a set of standard procedures for descr ..."
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Cited by 2 (0 self)
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ative has revised the gene nomenclature system for rice (Oryza) to take advantage of the completion of the rice genome sequence and the emergence of new methods for detecting, characterizing, and describing genes in the biological community. This paper outlines a set of standard procedures
Gene nomenclature by default, or BLASTing to Babel
"... The current proliferation of mammalian genomes is creating a nomenclature issue caused by naming genes based on their best BLAST hit to a gene in another annotated genome. The rat genome is relying heavily on the mouse genome for nomenclature, but not all rat genes have direct orthologues in the mou ..."
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The current proliferation of mammalian genomes is creating a nomenclature issue caused by naming genes based on their best BLAST hit to a gene in another annotated genome. The rat genome is relying heavily on the mouse genome for nomenclature, but not all rat genes have direct orthologues
SPOTLIGHT The POU-er of gene nomenclature
"... The pluripotency factor POU5F1 (OCT4) is well known as a key regulator of stem cell fate. Homologues of POU5F1 exist throughout vertebrates, but the evolutionary and functional relationships between the various family members have been unclear. The level to which function has been conserved within t ..."
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this family provides insight into the evolution of early embryonic potency. Here, we seek to clarify the relationship between POU5F1 homologues in the vertebrate lineage, both phylogenetically and functionally. We resolve the confusion over the identity of the zebrafish gene, which was originally named pou2
Abstract Review Human and orthologous gene nomenclature
, 2005
"... Received by A.J. van Wijnen Standardised human gene nomenclature is an essential tool for all researchers, and applying this nomenclature to orthologous genes in other species greatly extends its utility. As more genomes are sequenced and annotated the wealth of information in the public domain conc ..."
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Received by A.J. van Wijnen Standardised human gene nomenclature is an essential tool for all researchers, and applying this nomenclature to orthologous genes in other species greatly extends its utility. As more genomes are sequenced and annotated the wealth of information in the public domain
Naming “junk”: human nonprotein coding RNA (ncRNA) gene nomenclature
- Human Genomics
, 2011
"... Previously, the majority of the human genome was thought to be ‘junk ’ DNA with no functional purpose. Over the past decade, the field of RNA research has rapidly expanded, with a concomitant increase in the number of non-protein coding RNA (ncRNA) genes identified in this ‘junk’. Many of the encode ..."
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Cited by 6 (1 self)
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of the encoded ncRNAs have already been shown to be essential for a variety of vital functions, and this wealth of annotated human ncRNAs requires stan-dardised naming in order to aid effective communication. The HUGO Gene Nomenclature Committee (HGNC) is the only organisation authorised to assign standardised
Entrez Gene: gene-centered information at NCBI
- Nucleic Acids Res
, 2007
"... Entrez Gene (www.ncbi.nlm.nih.gov/entrez/query. fcgi?db=gene) is NCBI’s database for gene-specific information. Entrez Gene includes records from genomes that have been completely sequenced, that have an active research community to con-tribute gene-specific information or that are sched-uled for in ..."
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Cited by 340 (12 self)
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, stable and tracked integers as identifiers. The content (nomenclature, map loca-tion, gene products and their attributes, markers, phenotypes and links to citations, sequences, varia-tion details, maps, expression, homologs, protein domains and external databases) is provided via interactive browsing
Plant Methods BioMed Central Commentary Standardized gene nomenclature for the Brassica genus
, 2008
"... which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. The genus Brassica (Brassicaceae, Brassiceae) is closely related to the model plant Arabidopsis, and includes several important crop plants. Against the background of ongoing g ..."
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genome sequencing, and in line with efforts to standardize and simplify description of genetic entities, we propose a standard systematic gene nomenclature system for the Brassica genus. This is based upon concatenating abbreviated categories, where these are listed in descending order of significance
CleanEx: a database of heterogeneous gene
, 2003
"... expression data based on a consistent gene nomenclature ..."
Results 1 - 10
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368
