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Listing All Trees with Specified Degree Sequence
"... In this paper we designed a simple algorithm to generate all ordered trees with specified degree sequence. The algorithm generates each tree in O(1) time for each on average. 1 ..."
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In this paper we designed a simple algorithm to generate all ordered trees with specified degree sequence. The algorithm generates each tree in O(1) time for each on average. 1
The giant kcore of a random graph with a specified degree sequence
, 2003
"... The kcore of a graph is the maximal induced subgraph with minimum degree k. In this paper, we nd conditions under which the kcore of a random graph with a specied degree sequence almost surely contains a constant fraction of the graph's vertices. This problem has been studied earlier by Pitte ..."
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Cited by 10 (1 self)
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The kcore of a graph is the maximal induced subgraph with minimum degree k. In this paper, we nd conditions under which the kcore of a random graph with a specied degree sequence almost surely contains a constant fraction of the graph's vertices. This problem has been studied earlier
A Critical Point For Random Graphs With A Given Degree Sequence
, 2000
"... Given a sequence of nonnegative real numbers 0 ; 1 ; : : : which sum to 1, we consider random graphs having approximately i n vertices of degree i. Essentially, we show that if P i(i \Gamma 2) i ? 0 then such graphs almost surely have a giant component, while if P i(i \Gamma 2) i ! 0 the ..."
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Cited by 507 (8 self)
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Given a sequence of nonnegative real numbers 0 ; 1 ; : : : which sum to 1, we consider random graphs having approximately i n vertices of degree i. Essentially, we show that if P i(i \Gamma 2) i ? 0 then such graphs almost surely have a giant component, while if P i(i \Gamma 2) i ! 0
Efficient similarity search in sequence databases
, 1994
"... We propose an indexing method for time sequences for processing similarity queries. We use the Discrete Fourier Transform (DFT) to map time sequences to the frequency domain, the crucial observation being that, for most sequences of practical interest, only the first few frequencies are strong. Anot ..."
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Cited by 515 (19 self)
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. Another important observation is Parseval's theorem, which specifies that the Fourier transform preserves the Euclidean distance in the time or frequency domain. Having thus mapped sequences to a lowerdimensionality space by using only the first few Fourier coe cients, we use Rtrees to index
Tandem repeats finder: a program to analyze DNA sequences
, 1999
"... A tandem repeat in DNA is two or more contiguous, approximate copies of a pattern of nucleotides. Tandem repeats have been shown to cause human disease, may play a variety of regulatory and evolutionary roles and are important laboratory and analytic tools. Extensive knowledge about pattern size, co ..."
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Cited by 961 (9 self)
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, copy number, mutational history, etc. for tandem repeats has been limited by the inability to easily detect them in genomic sequence data. In this paper, we present a new algorithm for finding tandem repeats which works without the need to specify either the pattern or pattern size. We model tandem
Highly Dynamic DestinationSequenced DistanceVector Routing (DSDV) for Mobile Computers
, 1994
"... An adhoc network is the cooperative engagement of a collection of Mobile Hosts without the required intervention of any centralized Access Point. In this paper we present an innovative design for the operation of such adhoc networks. The basic idea of the design is to operate each Mobile Host as a ..."
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Cited by 2076 (8 self)
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as a specialized router, which periodically advertises its view of the interconnection topology with other Mobile Hosts within the network. This amounts to a new sort of routing protocol. We have investigated modifications to the basic BellmanFord routing mechanisms, as specified by RIP [5], to make
Fitting a mixture model by expectation maximization to discover motifs in biopolymers.
 Proc Int Conf Intell Syst Mol Biol
, 1994
"... Abstract The algorithm described in this paper discovers one or more motifs in a collection of DNA or protein sequences by using the technique of expect~tiou ma.,dmization to fit a twocomponent finite mixture model to the set of sequences. Multiple motifs are found by fitting a mixture model to th ..."
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Cited by 947 (5 self)
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to the data, probabilistically erasing tile occurrences of the motif thus found, and repeating the process to find successive motifs. The algorithm requires only a set of unaligned sequences and a number specifying the width of the motifs as input. It returns a model of each motif and a threshold which
Hidden Markov models in computational biology: applications to protein modeling
 JOURNAL OF MOLECULAR BIOLOGY
, 1994
"... Hidden.Markov Models (HMMs) are applied t.0 the problems of statistical modeling, database searching and multiple sequence alignment of protein families and protein domains. These methods are demonstrated the on globin family, the protein kinase catalytic domain, and the EFhand calcium binding moti ..."
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Cited by 655 (39 self)
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database fit the globin, kinase and EFhand HMMs), the '\ HMM is able to distinguish members of these families from nonmembers with a high degree of accuracy. Both the HMM and PROFILESEARCH (a technique used to search for relationships between a protein sequence and multiply aligned sequences
Mining Sequential Patterns: Generalizations and Performance Improvements
 RESEARCH REPORT RJ 9994, IBM ALMADEN RESEARCH
, 1995
"... The problem of mining sequential patterns was recently introduced in [3]. We are given a database of sequences, where each sequence is a list of transactions ordered by transactiontime, and each transaction is a set of items. The problem is to discover all sequential patterns with a userspecified ..."
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Cited by 759 (5 self)
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The problem of mining sequential patterns was recently introduced in [3]. We are given a database of sequences, where each sequence is a list of transactions ordered by transactiontime, and each transaction is a set of items. The problem is to discover all sequential patterns with a userspecified
Mega: molecular evolutionary genetic analysis software for microcomputers
 CABIOS
, 1994
"... A computer program package called MEGA has been developed for estimating evolutionary distances, reconstructing phylogenetic trees and computing basic statistical quantities from molecular data. It is written in C+ + and is intended to be used on IBM and IBMcompatible personal computers. In this pr ..."
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Cited by 505 (10 self)
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. In this program, various methods for estimating evolutionary distances from nucleotide and amino acid sequence data, three different methods of phylogenetic inference (UPGMA, neighborjoining and maximum parsimony) and two statistical tests of topological differences are included. For the maximum parsimony method
Results 1  10
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