Assessing distant homology between an aligned family and a proposed member through accurate sequence alignment
|
634
|
A general method applicable to the search for similarities in the amino acid sequence of two proteins
– Needleman, Wunch
- 1970
|
|
319
|
Amino acid substitution matrices from protein blocks
– Henikoff, Henikoff
- 1989
|
|
206
|
An improved algorithm for matching biological sequences
– Gotoh
- 1982
|
|
191
|
Introduction to Computational Biology
– Waterman
- 1995
|
|
185
|
The Theory and Computation of Evolutionary Distances
– Sellers
|
|
180
|
A model of evolutionary change in proteins
– Dayhoff, Schwartz, et al.
- 1978
|
|
152
|
Eisenberg D: Profile analysis: detection of distantly related proteins
– Gribskov, AD
- 1987
|
|
123
|
Rapid and sensitive protein similarity searches
– Lipman, Pearson
- 1985
|
|
114
|
On the complexity of multiple sequence alignment
– Wang, Jiang
- 1994
|
|
103
|
Rapid and sensitive sequence comparisons with
– Pearson
- 1985
|
|
101
|
The multiple sequence alignment problem in biology
– Carrillo, Lipman
- 1988
|
|
92
|
Optimal alignments in linear space
– Myers, Miller
- 1988
|
|
79
|
A tool for Multiple Sequence Alignment
– Lipman, Altschul, et al.
- 1989
|
|
45
|
Sequence Comparison with Concave Weighting Functions
– Miller, Myers
- 1988
|
|
44
|
Improving the Practical Space and Time Efficiency of the Shortest-paths Approach to Sum-of-pairs Multiple Sequence Alignment
– Gupta, Kececioglu, et al.
- 1995
|
|
38
|
Gap costs for multiple sequence alignment
– Altschul
- 1989
|
|
38
|
Speeding Up Dynamic Programming with Applications to Molecular
– Galil, Giancarlo
- 1989
|
|
30
|
Optimal alignment between groups of sequences and its application to multiple sequence alignment
– Gotoh
- 1993
|
|
26
|
Searching databases of conserved sequence regions by aligning protein multiple-alignments
– Pietrokovski
- 1996
|
|
23
|
Dynamic programming algorithms for biological sequence comparison
– Pearson, Miller
- 1992
|
|
20
|
Significance of nucleotide sequence alignments: A method for random sequence permutation that preserves dinucleotide and codon
– Altschul, Erickson
- 1985
|
|
19
|
Aligning amino acid sequences: comparison of commonly used methods
– Feng, Johnson, et al.
- 1985
|
|
18
|
Random sequences
– Fitch
- 1983
|
|
16
|
Similar amino acid sequences: chance or common ancestry
– Doolittle
- 1981
|
|
16
|
Embedding strategies for effective use of information from multiple sequence alignments
– Henikoff, Henikoff
- 1997
|
|
13
|
Score distributions for simultaneous matching to multiple motifs
– Bailey, Gribskov
- 1997
|
|
13
|
An improved method of testing for evolutionary homology
– Fitch
- 1966
|
|
10
|
Shuffling biological sequences
– Kandel, Matias, et al.
- 1996
|
|
7
|
Further improvement in methods of group-to-group sequence alignment with generalized profile operations
– Gotoh
- 1994
|
|
7
|
On the statistical significance of nucleic acid similarities
– Lipman, Wilbur, et al.
- 1984
|
|
3
|
De novo and inverse folding predictions of protein structure and dynamics
– Godzik, Kolinski, et al.
- 1993
|
|
2
|
Sigma factors from E. coli, B. subtilis, phage SP01, and phage T4 are homologous proteins
– Gribskov, Burgess
- 1986
|
|
2
|
HIV-1 encodes a sequence overlapping env gp41 with highly significant similarity to selenium dependent glutathione peroxidases." Journal of Acquired Immune Deficiency Human Retrovirology 15:5
– Taylor, Bhat, et al.
- 1997
|
|
1
|
Topology fingerprint approach tto the inverse protein folding problem
– Godzik, Kolinski, et al.
- 1990
|
|
1
|
Sequence structure matching in globular proteins: Application to supersecondary and tertiary structure determination
– Godzik, Skolnick
- 1209
|
|
1
|
Aligning alignments." To appear
– Kececioglu, Zhang
- 1998
|
|
1
|
Bacterial cellulose-binding domain-like sequencs in eucaryotic polypeptides
– Meinke, Gilkes, et al.
- 1991
|
|
1
|
The statistical distribution of automated DNA sequence analysis
– Smith, Waterman
- 1981
|
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