Abstract:
A conjecture of Mirkin, Muchnik and Smith is answered affirmatively which connects the inconsistency function, a biologically meaningful similarity/dissimilarity measure for a gene tree and a species tree, to the mutation cost function, a combinatorial measure based on the mapping of trees. A linear-time algorithm for computing the mutation cost function is also derived from the conjecture. Appeared on J. of Comput. Bio.. vol. 4, No. 2, 177-187.
Citations
|
2004
|
The Design and Analysis of Computer Algorithms
– Aho, Hopcroft, et al.
- 1974
|
|
221
|
Fast algorithms for finding nearest common ancestors
– Harel, Tarjan
- 1984
|
|
151
|
On Finding Lowest Common Ancestors: Simplification and Parallelization
– Schieber, Vishkin
- 1988
|
|
112
|
Evolution by gene duplication
– Ohno
- 1970
|
|
57
|
Maps between trees and cladistic analysis of historical associations among genes, organisms and areas
– Page
- 1994
|
|
48
|
Molecular evolutionary genetics
– Nei
- 1987
|
|
39
|
Comparison of labeled trees with valency three
– Robinson
- 1971
|
|
37
|
On the similarity of dendrograms
– Waterman, Smith
- 1978
|
|
30
|
On distances between phylogenetic trees
– DasGupta, He, et al.
- 1997
|
|
30
|
Reconstruction of ancient molecular phylogeny. Molecular Phylogenetics and Evolution
– Guig'o, Muchnik, et al.
- 1996
|
|
30
|
Consensus n-trees
– Margush, McMorris
- 1981
|
|
24
|
N-trees as nestings: complexity, similarity and consensus
– Adams
- 1986
|
|
19
|
Relationships between gene trees and species
– PAMILO, NEI
- 1988
|
|
17
|
On the use of ordered sets in problems of comparison and consensus of classifications
– Barthelemy, Laclerc, et al.
- 1986
|
|
15
|
Gene genealogy in three related populations : Consistency probability between gene and population trees
– TAKAHATA
- 1989
|
|
14
|
Fast algorithms for nding nearest common ancestors
– Harel, Tarjan
- 1984
|
|
13
|
Inferences of species phylogeny in relation to segregation of ancient polymorphisms
– WU
- 1991
|
|
9
|
Phylogenetic relationship of mitochondrial DNA under various models of speciation
– Neigel, Avise
- 1986
|
|
8
|
Distinguishing homologous and analogous proteins, Syst
– Fitch
- 1970
|
|
8
|
A biologically meaningful model for comparing molecular phylogenies
– Mirkin, Muchnik, et al.
- 1995
|
|
7
|
On the equivalence of two tree mapping measures, Arbeitspapiere der GMD
– Eulenstein, Vingron
- 1996
|
|
5
|
Comparing trees with pendant vertices labelled
– Hendy, Little, et al.
- 1984
|
|
5
|
On nding lowest common ancestors: Simpli cation and parallelization
– Schieber, Vishkin
- 1988
|
|
1
|
Fitting the gene linage into its species lineage. A parsimony strategy illustrated by cladograms constructed from globin sequences, Syst
– Goodman, Czelusniak, et al.
|
|
