On the power of circular splicing systems and DNA computability (1997) [21 citations — 3 self]

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by Takashi Yokomori, Satoshi Kobayashi, Claudio Ferretti

Proc. of IEEE Intern. Conf. on Evol. Comput. (ICEC'97

http://ylab-gw.cs.uec.ac.jp/../Papers/yokomori/cssfinal.ps.gz

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@INPROCEEDINGS{Yokomori97onthe,
    author = {Takashi Yokomori and Satoshi Kobayashi and Claudio Ferretti},
    title = {On the power of circular splicing systems and DNA computability},
    booktitle = {Proc. of IEEE Intern. Conf. on Evol. Comput. (ICEC'97},
    year = {1997},
    pages = {219--224}
}

Abstract:

From a biological motivation of interactions between linear and circular DNA sequences, we propose a new type of splicing models called circular H systems and show that they have the same computational power as Turing machines. It is also shown that there effectively exists a universal circular H system which can simulate any circular H system with the same terminal alphabet, which strongly suggests a feasible design for a DNA computer based on circular splicing.

Citations

415	Molecular computation of solutions of combinatorial problems – Adleman
267	Introduction to Formal Language Theory – Harrison - 1978
137	Formal languages theory and DNA: an analysis of the generative capacity of specific recombinant behaviors – Head
58	A DNA and Restriction Enzyme Implementation of Turing Machines – Rothemund - 1996
52	Formal reductions of the general combinatorial decision problem – Post - 1943
49	A universal molecular computer – Beaver - 1995
47	Breaking DES using a molecular computer – Boneh, Dunworth, et al. - 1995
43	Using DNA to solve NP-complete problems – Lipton
38	Computation and automata – Salomaa - 1985
37	On the splicing operation – Paun - 1996
34	Regular extended H systems are computationally universal – Paun - 1996
29	Regularity of splicing languages – Pixton - 1996
22	DNA computing based on splicing: The existence of universal computers – Paun - 1995
18	Splicing schemes and DNA – Head - 1992
18	Computing by splicing – Paun, Salomaa - 1996
14	Circular DNA and splicing systems – Siromoney, Subramanian, et al. - 1992
12	Joining and rotating data with molecules – Arita, Hagiya, et al. - 1997
5	DNA splicing systems and Post Systems – Ferretti, Yokomori - 1996

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