See this document in CiteSeerX!

Algorithmic Self-Assembly of DNA (1998)  (Make Corrections)  (2 citations)
Erik Winfree



  Home/Search   Context   Related

 
View or download:
caltech.edu/winfree/Pape...thesis.ps.gz
Cached:  PS.gz  PS  PDF   Image  Update  Help

From:  wisdom.weizmann.ac.il/~...bib_dna (more)
(Enter author homepages)

Rate this article: (best)
  Comment on this article  
(Enter summary)

Abstract: How can molecules compute? In his early studies of reversible computation, Bennett imagined an enzymatic Turing Machine which modified a hetero-polymer (such as DNA) to perform computation with asymptotically low energy expenditures. Adleman's recent experimental demonstration of a DNA computation, using an entirely different approach, has led to a wealth of ideas for how to build DNA-based computers in the laboratory, whose energy efficiency, information density, and parallelism may have... (Update)

Context of citations to this paper:   More

...the quilt by an assembly of small DNA motifs, where each motif is a 2 D or 3 D molecule, woven from DNA strands. Winfree et al. [58, 60] showed that DNA self assembly can in principle be used to perform general computations. Strand design is needed in order to create the...

Cited by:   More
Molecular Computing Machines - Yaakov Benenson Ehud   (Correct)
Strand Design for Bio-Molecular Computation - Brenneman, Condon (2001)   (Correct)

Similar documents (at the sentence level):   More
19.7%:   Simulations of Computing by Self-Assembly - Winfree (1998)   (Correct)
18.2%:   Universal Computation via Self-assembly of DNA: Some.. - Winfree, Yang, Seeman (1996)   (Correct)
11.3%:   On the Computational Power of DNA Annealing and Ligation - Winfree (1995)   (Correct)

Active bibliography (related documents):   More   All
0.9:   A DNA Sequence Compiler - Feldkamp, Banzhaf, Rauhe (2000)   (Correct)
0.8:   Experimental Progress in Computation by Self-Assembly of.. - LaBean, Winfree, Reif (1999)   (Correct)
0.7:   Paradigms for Biomolecular Computation - Reif (1998)   (Correct)

Similar documents based on text:   More   All
0.2:   Signal Reconstruction from Zero-Crossings - Roweis, Mahajan, Hopfield (1998)   (Correct)
0.2:   A Biologically Plausible Algorithm - For Reinforcement-Shaped.. (2003)   (Correct)
0.1:   Unknown - David Harlan Wood   (Correct)

Related documents from co-citation:   More   All
2:   DNA solutions of the maximal clique problem (context) - Ouyang, Kaplan et al. - 1997
2:   Molecular computation by DNA hairpin formation (context) - Sakamoto, Gouzu et al. - 2000
2:   Molecular computation: RNA solutions to chess problems (context) - Faulhammer, Cukras et al. - 2000

BibTeX entry:   (Update)

E. Winfree, "Algorithmic self-assembly of DNA", Ph.D. thesis at California Institute of Technology, August 1998, 110 pages. http://citeseer.ist.psu.edu/winfree98algorithmic.html   More

@phdthesis{ winfree98algorithmic,
    author = "Erik Winfree",
    title = "Algorithmic Self-Assembly of {DNA}",
    month = "~19",
    year = "1998",
    url = "citeseer.ist.psu.edu/winfree98algorithmic.html" }
Citations (may not include all citations):
653   Neural networks and physical systems with emergent collectiv.. (context) - Hopfield - 1982
249   Volume 3: Sorting and Searching (context) - Knuth, of - 1973
249   Molecular computation of solutions to combinatorial problems - Adleman - 1994
202   The Complexity of Boolean Functions - Wegener - 1987
86   DNA solutions of hard computational problems (context) - Lipton - 1995
76   The Mathematical Theory of Context Free Languages (context) - Ginsburg - 1966
75   Irreversibility and heat generation in the computing process (context) - Landauer - 1961
62   Lower bounds for deterministic and nondeterministic branchin.. - Razborov - 1991
59   The thermodynamics of computation -- a review (context) - Bennett - 1982
58   The undecidability of the domino problem (context) - Berger - 1966
54   On constructing a molecular computer - Adleman - 1996
50   Physics-like models of computation (context) - Margolus - 1984
47   Undecidability and nonperiodicity of tilings of the plane (context) - Robinson - 1971
39   DNA models and algorithms for NP-complete problems (context) - Bach, Condon et al. - 1996
37   Universal computation in simple one-dimensional cellular aut.. (context) - Lindgren, Nordahl - 1990
33   Massachusetts Institute of Technology (context) - Barrington, branching et al. - 1986
33   Freeman and Company (context) - Grunbaum, Shephard et al. - 1986
32   Universal computation via self-assembly of DNA: Some theory .. - Winfree, Yang et al. - 1984
29   Scientific American (context) - Gardner - 1966
25   Modified Branching Programs and Their Computational Power (context) - Meinel - 1989
24   Cellular Automata Machines (context) - Toffoli, Margolus - 1987
22   DNA solution of the maximal clique problem (context) - Ouyang, Kaplan et al. - 1997
17   Simple computation-universal cellular spaces (context) - Smith - 1971
15   A simple three-dimensional real-time reliable cellular array (context) - Gacs, Reif - 1988
13   Lower bounds to the complexity of symmetric boolean function.. (context) - Babai, Pudlak et al. - 1990
13   Towards parallel evaluation and learning of boolean -formula.. - Hagiya, Arita et al. - 1974
12   Molecular self-assembly and nanochemistry: a chemical strate.. (context) - Whitesides, Mathias et al. - 1991
10   DNA probes: Applications of the principles of nucleic acid h.. (context) - Wetmur - 1991
10   Designing amino acid sequences to fold with good hydrophobic.. (context) - Sun, Brem et al. - 1996
8   The synthesis from DNA of a molecule with the connectivity o.. (context) - Chen, Seeman - 1991
7   Local parallel biomolecular computing (context) - Reif - 1980
7   Nucleic-acid junctions and lattices (context) - Seeman - 1982
7   DNA double-crossover molecules (context) - Fu, Seeman - 1993
6   Seven-state solutions to the firing squad synchronization pr.. (context) - Yunes - 1994
6   A DNA-based method for rationally assembling nanoparticles i.. (context) - Mirkin, Letsinger et al. - 1996
6   Creating 3-dimensional graph structures with dna - Jonoska, Karl et al. - 1980
5   Single-step assembly of a gene and entire plasmid from large.. (context) - Stemmer, Crameri et al. - 1995
5   De novo design of sequences for nucleic acid structural engi.. (context) - Seeman - 1990
4   DNA-templated assembly and electrode attachment of a conduct.. (context) - Braun, Eichen et al. - 1998
4   Subquadratic simulations of circuits by branching programs (context) - Cai, Lipton - 1989
4   Oligonucleotide arrays: New concepts and possibilities (context) - Chetverin, Kramer - 1994
3   Nonrecursive tilings of the plane II (context) - Myers - 1974
3   Three-arm nucleic acid junctions are flexible (context) - Ma, Kallenbach et al. - 1986
2   Computers and Artificial Intelligence (context) - Pudlak, of - 1987
2   Gene synthesis machines (context) - Caruthers - 1985
2   Universal computation in few-body automata (context) - Biafore - 1986
2   Freeman and Company (context) - Kornberg, Baker et al. - 1991
2   Cleavage of double-crossover molecules by T4 endonuclease VI.. (context) - Fu, Kemper et al. - 1994
2   The design of a biochip: A self-assembling molecular-scale m.. (context) - Robinson, Seeman - 1987
2   Oligonucleotide-directed self-assembly of proteins (context) - Niemeyer, Sano et al. - 1994
1   Thermodynamic simulation of deoxynucleotide hybridization fo.. (context) - Hartemink, Gifford - 1974
1   Mechanisms of growth for protein and virus crystals (context) - Malkin, Kuznetsov et al. - 1995
1   Structureactivity relationships in zeolites (context) - Ribeiro, Alvarez et al. - 1996
1   Self-assembly and nucleation of a two-dimensional array of p.. (context) - Erickson - 1980
1   Enzymatics recognition of the base-pair between isocytidine .. (context) - Switzer, Moroney et al. - 1993
1   Identification of double Holliday junctions as intermediates.. (context) - Schwacha, Kleckner - 1995
1   Volume 1: Fundamentals of Crystals (context) - Vainshtein - 1994
1   Effect of ionic strength on the hybridization of oliodeoxynu.. (context) - Quartin, Wetmur - 1989
1   Construction of biologically functional bacterial plasmids i.. (context) - Cohen, Chang et al. - 1973
1   NAMOT2 --- a redesigned nucleic acid modelling tool: constru.. (context) - Carter, Tung - 1996
1   Part III: The behavior of biological macromolecules (context) - Cantor, Schimmel - 1980
1   WWW preprint: http://www (context) - Beaver, complexity et al. - 1995
1   Photonic crystals: moulding the flow of light (context) - Joannopolous, Meade et al. - 1995
1   A DNA enzyme that cleaves RNA (context) - Breaker, Joyce - 1994
1   A DNA decamer with a sticky end: The crystal structure of d-.. (context) - Qiu, Dewan et al. - 1997
1   The ligation and flexibility of four-arm DNA junctions (context) - Petrillo, Newton et al. - 1988
1   The molecular electronic device and the biochip computer: pr.. (context) - Haddon, Lamola - 1985
1   Refinement of the solution structure of a branched DNA three.. (context) - Ouporov, Leontis - 1995
1   Reproducible imaging and dissection of plasmid DNA under liq.. (context) - Hansma, Vesenka et al. - 1992

Documents on the same site (http://www.wisdom.weizmann.ac.il/~leia/dna/bib_dna.html):
Paradigms for Biomolecular Computation - Reif (1998)   (Correct)

Online articles have much greater impact   More about CiteSeer.IST   Add search form to your site   Submit documents   Feedback  

CiteSeer.IST - Copyright Penn State and NEC