YASS: enhancing the sensitivity of DNA similarity search

YASS: enhancing the sensitivity of DNA similarity search (2005)

by Laurent Noé , Gregory Kucherov

Venue:	NUCLEIC ACIDS RESEARCH
Citations:	51 - 14 self

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Datum	Value	Source
TITLE	YASS: enhancing the sensitivity of DNA similarity search	user correction
AUTHOR NAME	Laurent Noé	user correction
AUTHOR AFFIL	LORIA/INRIA-Lorraine	user correction
AUTHOR ADDR	615 rue du Jardin Botanique, 54602 Villers-les-Nancy, France	user correction
AUTHOR NAME	Gregory Kucherov	user correction
AUTHOR AFFIL	LORIA/INRIA-Lorraine	user correction
AUTHOR ADDR	615 rue du Jardin Botanique, 54602 Villers-les-Nancy, France	user correction
ABSTRACT	YASS is a DNA local alignment tool based on an efficient and sensitive filtering algorithm. It applies transition-constrained seeds to specify the most probable conserved motifs between homologous sequences, combined with a flexible hit criterion used to identify groups of seeds that are likely to exhibit significant alignments. A web interface (http://www.loria.fr/projects/YASS/) is available to upload input sequences in fasta format, query the program and visualize the results obtained in several forms (dot-plot, tabular output and others). A standalone version is available for download from the web page.	user correction
YEAR	2005	SVM HeaderParse 0.2
VENUE	NUCLEIC ACIDS RESEARCH	user correction
VENUE TYPE	JOURNAL	INFERENCE
PAGES	540--543	INFERENCE
VOLUME	33	INFERENCE
CITATIONS	17 found	ParsCit 1.0