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HMMER web server: interactive sequence similarity searching (2011)
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by
Robert D. Finn
,
Jody Clements
,
Sean R. Eddy
| Venue: | Nucleic Acids Research |
| Citations: | 260 - 0 self |
BibTeX
@ARTICLE{Finn11hmmerweb,
author = {Robert D. Finn and Jody Clements and Sean R. Eddy},
title = {HMMER web server: interactive sequence similarity searching},
journal = {Nucleic Acids Research},
year = {2011},
pages = {29--37}
}
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Abstract
HMMER is a software suite for protein sequence similarity searches using probabilistic methods. Previously, HMMER has mainly been available only as a computationally intensive UNIX command-line tool, restricting its use. Recent advances in the soft-ware, HMMER3, have resulted in a 100-fold speed gain relative to previous versions. It is now feasible to make efficient profile hidden Markov model (pro-file HMM) searches via the web. A HMMER web server
