URec: a system for unrooted reconciliation (2006)
by
Pawel Górecki
,
Jerzy Tiuryn
| Citations: | 1 - 0 self |
BibTeX
@MISC{Górecki06urec:a,
author = {Pawel Górecki and Jerzy Tiuryn},
title = {URec: a system for unrooted reconciliation},
year = {2006}
}
Bookmark
 |
 |
 |
 |
 |
 |
OpenURL
Abstract
Summary: URec is a software based on a concept of unrooted reconciliation. It can be used to reconcile a set of unrooted gene trees with a rooted species tree or a set of rooted species trees. Moreover, it computes detailed distribution of gene duplications and gene losses in a species tree. It can be used to infer optimal species phylogenies for a given set of gene trees. URec is implemented in C++ and can be easily compiled under Unix and Windows systems. Availability: Software is freely available for download from our website at
Citations
| 77 | Fitting the gene lineage into its species lineage: a parsimony strategy illustrated by cladograms constructed from globin sequences - Goodman, Czelusniak, et al. - 1979 |
| 77 | RDM: Maps between trees and cladistic analysis of historical associations among genes, organisms, and areas. Syst Biol - Page - 1994 |
| 47 | Zhang L: From gene trees to species trees - Ma, Li |
| 37 | Reconstruction of ancient molecular phylogeny - Guigó, Muchnik, et al. - 1996 |
| 24 | A biologically consistent model for comparing molecular phylogenies - Mirkin, Muchnik, et al. - 1995 |
| 19 | Tiuryn J: DLS-trees: A model of evolutionary scenario - Gorecki |
| 17 | Notung: Dating gene duplications using gene family trees - Chen, Durand, et al. |
| 3 | Reconciling gene trees to a species tree. Algorithms and Complexity - Bonizzoni, Vedova, et al. - 2003 |
| 3 | Inferring phylogeny from whole genomes - Górecki, Tiuryn - 2006 |
