Natively unstructured regions in proteins identified from contact

Natively unstructured regions in proteins identified from contact

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by Structural Bioinformatics , Avner Schlessinger , Marco Punta , Burkhard Rost

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@MISC{Bioinformatics_nativelyunstructured,
    author = {Structural Bioinformatics and Avner Schlessinger and Marco Punta and Burkhard Rost},
    title = {Natively unstructured regions in proteins identified from contact},
    year = {}
}

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Abstract

predictions

Citations

1891	Gapped BLAST and PSI-BLAST: a new generation of protein database search programs - Altschul, Madden, et al. - 1997
382	A simple method for displaying the hydropathic character of a protein - Kyte, RF - 1982
172	Database of homology-derived protein structures and the structural meaning of sequence alignment. Proteins 9: 56–68 - Sander, Schneider - 1991
131	Twilight zone of protein sequence alignments. Protein Eng 12: 85–94 - Rost - 1999
113	The hallmarks of cancer - Hanahan, RA
66	Intrinsically unstructured proteins: re-assessing the protein structure-function paradigm - Wright, Dyson - 1999
62	Protein disorder prediction: implications for structural proteomics - Linding, Jensen, et al. - 2003
54	Intrinsically unstructured proteins and their functions - Dyson, Wright - 2005
51	B (2002) Alignments grow, secondary structure prediction improves. Proteins 46 - Przybylski, Rost
33	GlobPlot: exploring protein sequences for globularity and disorder - Linding, Russell, et al. - 2003
30	Intrinsically disordered proteins - Dunker - 2001
28	I (2005) IUPred: Web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content - Dosztanyi, Csizmok, et al.
28	Prediction and functional analysis of native disorder in proteins from the three kingdoms of life - Ward, Sodhi, et al. - 2004
27	Coupling of folding and binding for unstructured proteins - Dyson, Wright - 2002
23	Intrinsic disorder in cell-signaling and cancerassociated proteins - Iakoucheva, Brown, et al. - 2002
23	Ab initio folding of proteins using restraints derived from evolutionary information. Proteins 1999;Suppl 3:177–185 - AR, Kolinski, et al.
22	B (2003) UniqueProt: Creating representative protein sequence sets - Mika, Rost
20	B: PROFcon: novel prediction of long-range contacts - Punta, Rost
20	The interplay between structure and function in intrinsically unstructured proteins - Tompa - 2005
19	I (2005) The pairwise energy content estimated from amino acid composition discriminates between folded and intrinsically unstructured proteins - Dosztanyi, Csizmok, et al.
19	Loopy proteins appear conserved in evolution - Liu, Tan, et al. - 2002
17	Protein disorder and the evolution of molecular recognition theory predictions and observations. Pac Symp Biocomput 473–484 - AK, Garner, et al. - 1998
17	Thousands of proteins likely to have long disordered regions. Pac Symp Biocomput 3 - Romero, Obradovic, et al. - 1998
16	An iterative method for extracting energy-like quantities from protein 15 - Thomas, Dill - 1996
15	Protein folding and unfolding at atomic resolution - Fersht, Daggett - 2002
15	NORSp: predictions of long regions without regular secondary structure - Liu, Rost - 2003
15	DisProt: a database of protein disorder - Vucetic, Obradovic, et al. - 2005
14	Comparing and combining predictors of mostly disordered proteins - Oldfield, Cheng, et al. - 2005
13	Flexible nets. The roles of intrinsic disorder in protein interaction networks - Dunker, Cortese, et al. - 2005
13	H (2006) Disordered domains and high surface charge confer hubs with the ability to interact with multiple proteins in interaction networks - Patil, Nakamura
13	Length-dependent prediction of protein intrinsic disorder - Peng, Radivojac, et al. - 2006
12	2005a) Accurate prediction of protein disordered regions by mining protein structure data - Cheng
12	Preformed structural elements feature in partner recognition by intrinsically unstructured proteins - Fuxreiter, Simon, et al. - 2004
11	Natively unfolded proteins - Fink - 2005
11	Protein folding rates estimated from contact predictions - Punta, Rost - 2005
9	Interference by huntingtin and atrophin-1 with cbp-mediated transcription leading to cellular toxicity Science 291 - Nucifora, Sasaki, et al. - 2001
8	Recognition between flexible protein molecules: induced and assisted folding - Demchenko - 2001
8	Roles of partly unfolded conformations in macromolecular self-assembly - Namba - 2001
8	FoldIndex: a simple tool to predict whether a given protein sequence is intrinsically unfolded - Prilusky, Felder, et al. - 2005
7	Atomic structure of scallop myosin subfragment S1 complexed with MgADP: a novel conformation of the myosin head. Cell - Houdusse, Kalbokis, et al. - 1999
7	Coupled folding and binding with alpha-helix-forming molecular recognition elements - Oldfield
7	Alternative splicing in concert with protein intrinsic disorder enables increased functional diversity in multicellular organisms - Romero, Zaidi, et al. - 2006
7	Showing your ID: intrinsic disorder as an ID for recognition, regulation and cell signaling - Uversky, Oldfield, et al. - 2005
6	I: Stabilization centers in proteins: identification, characterization and predictions - Dosztanyi, Fiser, et al. - 1997
6	Recognition by Max of its cognate DNA through a dimeric b/HLH/Z domain - Ferre-D’Amare, Prendergast, et al. - 1993
6	Assessment of disorder predictions - Jin, Dunbrack - 2005
6	Intrinsic disorder in transcription factors - Liu, Perumal, et al. - 2006
6	The diverse superfamily of lysine acetyltransferases and their roles in leukemia and other diseases - Yang - 2004
5	A: CASP6 assessment of contact prediction - Grana, Baker, et al.
5	Evaluation of Short-Range Interactions as Secondary Structure Energies for Protein Fold and Sequence Recognition - Miyazawa, Jernigan - 1999