Pfam protein families database

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Pfam protein families database

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by Robert D. Finn , John Tate , Jaina Mistry , Penny C. Coggill , Stephen John Sammut , Hans-rudolf Hotz , Goran Ceric , Kristoffer Forslund , Sean R. Eddy , Erik L. L. Sonnhammer , Alex Bateman

Venue:	Nucleic Acids Research, 2008, 36(Database issue): D281–D288
Citations:	769 - 13 self

BibTeX

@INPROCEEDINGS{Finn_pfamprotein,
    author = {Robert D. Finn and John Tate and Jaina Mistry and Penny C. Coggill and Stephen John Sammut and Hans-rudolf Hotz and Goran Ceric and Kristoffer Forslund and Sean R. Eddy and Erik L. L. Sonnhammer and Alex Bateman},
    title = {Pfam protein families database},
    booktitle = {Nucleic Acids Research, 2008, 36(Database issue): D281–D288},
    year = {}
}

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Abstract

Pfam is a comprehensive collection of protein domains and families, represented as multiple sequence alignments and as profile hidden Markov models. The current release of Pfam (22.0) contains 9318 protein families. Pfam is now based not only on the UniProtKB sequence database, but also on NCBI GenPept and on sequences from selected metage-nomics projects. Pfam is available on the web from the consortium members using a new, consistent and improved website design in the UK

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