Multiseed lossless filtration (2005)

by Gregory Kucherov , Laurent Noé , Mikhail A. Roytberg
Venue:IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS (TCBB)
Citations:35 - 7 self

Active Bibliography

2 Evidence Combination in Hidden Markov Models for Gene Prediction – Bronislava Brejová - 2005
36 A unifying framework for seed sensitivity and its application to subset seeds – Gregory Kucherov, Laurent Noé, Mikhail A. Roytberg - 2006
A COMPUTATIONAL MODEL OF MOTION PROCESSING IN AREA MST LEARNING TO SEGMENT THREE DIMENSIONAL MOVING OBJECTS – R S Zemel, S J Nowlan, T J Sejnowski
34 Improved hit criteria for DNA local alignment – Laurent Noé, Gregory Kucherov - 2004
6 Optimal spaced seeds for faster approximate string matching – Martin Farach-Colton, Gad M. Landau, S. Cenk Sahinalp, Dekel Tsur
11 A tutorial of recent developments in the seeding of local alignment – Daniel G. Brown, Ming Li, Bin Ma - 2004
2 Amino Acid Classification and Hash Seeds for Homology Search – Weiming Li, Bin Ma, Kaizhong Zhang - 2009
7 Multiple spaced seeds for homology search – Lucian Ilie, Silvana Ilie - 2007
3 Long spaced seeds for finding similarities between biological sequences – Lucian Ilie, Silvana Ilie - 2007
52 YASS: enhancing the sensitivity of DNA similarity search – Laurent Noé, Gregory Kucherov - 2005
7 Fast computation of good multiple spaced seeds – Lucian Ilie, Silvana Ilie - 2007
17 Hardness of optimal spaced seed design – François Nicolas, Eric Rivals - 2005
2 A survey of seeding for sequence alignment – Daniel G. Brown - 2007
18 Optimizing multiple seeds for protein homology search – Daniel G. Brown - 2005
BDD-Based Analysis of Gapped q-Gram Filters* – Marc Fontaine, Stefan Burkhardt
Run Probability of High-Order Seed Patterns and its Applications to Finding Good Transition Seeds – J. L. Yang, L. X. Zhang
5 A fast and flexible approach to oligonucleotide probe design for genomes and gene families – Shengzhong Feng , Elisabeth R.M. Tillier - 2007
7 Rapid Homology Search with Two-Stage Extension and Daughter Seeds – Miklos Csürös, Bin Ma - 2005
7 Rapid Homology Search with Neighbor Seeds – Miklos Csürös, Bin Ma - 2005