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Exact Sampling with Coupled Markov Chains and Applications to Statistical Mechanics
, 1996
"... For many applications it is useful to sample from a finite set of objects in accordance with some particular distribution. One approach is to run an ergodic (i.e., irreducible aperiodic) Markov chain whose stationary distribution is the desired distribution on this set; after the Markov chain has ..."
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Cited by 543 (13 self)
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For many applications it is useful to sample from a finite set of objects in accordance with some particular distribution. One approach is to run an ergodic (i.e., irreducible aperiodic) Markov chain whose stationary distribution is the desired distribution on this set; after the Markov chain has run for M steps, with M sufficiently large, the distribution governing the state of the chain approximates the desired distribution. Unfortunately it can be difficult to determine how large M needs to be. We describe a simple variant of this method that determines on its own when to stop, and that outputs samples in exact accordance with the desired distribution. The method uses couplings, which have also played a role in other sampling schemes; however, rather than running the coupled chains from the present into the future, one runs from a distant point in the past up until the present, where the distance into the past that one needs to go is determined during the running of the al...
Unified segmentation
, 2005
"... A probabilistic framework is presented that enables image registration, tissue classification, and bias correction to be combined within the same generative model. A derivation of a loglikelihood objective function for the unified model is provided. The model is based on a mixture of Gaussians and ..."
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Cited by 324 (12 self)
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A probabilistic framework is presented that enables image registration, tissue classification, and bias correction to be combined within the same generative model. A derivation of a loglikelihood objective function for the unified model is provided. The model is based on a mixture of Gaussians and is extended to incorporate a smooth intensity variation and nonlinear registration with tissue probability maps. A strategy for optimising the model parameters is described, along with the requisite partial derivatives of the objective function.
Deterministic edgepreserving regularization in computed imaging
 IEEE Trans. Image Processing
, 1997
"... Abstract—Many image processing problems are ill posed and must be regularized. Usually, a roughness penalty is imposed on the solution. The difficulty is to avoid the smoothing of edges, which are very important attributes of the image. In this paper, we first give conditions for the design of such ..."
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Cited by 311 (27 self)
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Abstract—Many image processing problems are ill posed and must be regularized. Usually, a roughness penalty is imposed on the solution. The difficulty is to avoid the smoothing of edges, which are very important attributes of the image. In this paper, we first give conditions for the design of such an edgepreserving regularization. Under these conditions, we show that it is possible to introduce an auxiliary variable whose role is twofold. First, it marks the discontinuities and ensures their preservation from smoothing. Second, it makes the criterion halfquadratic. The optimization is then easier. We propose a deterministic strategy, based on alternate minimizations on the image and the auxiliary variable. This leads to the definition of an original reconstruction algorithm, called ARTUR. Some theoretical properties of ARTUR are discussed. Experimental results illustrate the behavior of the algorithm. These results are shown in the field of tomography, but this method can be applied in a large number of applications in image processing. I.
A Multiscale Random Field Model for Bayesian Image Segmentation
, 1996
"... Many approaches to Bayesian image segmentation have used maximum a posteriori (MAP) estimation in conjunction with Markov random fields (MRF). While this approach performs well, it has a number of disadvantages. In particular, exact MAP estimates cannot be computed, approximate MAP estimates are com ..."
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Cited by 308 (21 self)
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Many approaches to Bayesian image segmentation have used maximum a posteriori (MAP) estimation in conjunction with Markov random fields (MRF). While this approach performs well, it has a number of disadvantages. In particular, exact MAP estimates cannot be computed, approximate MAP estimates are computationally expensive to compute, and unsupervised parameter estimation of the MRF is difficult. In this paper, we propose a new approach to Bayesian image segmentation which directly addresses these problems. The new method replaces the MRF model with a novel multiscale random field (MSRF), and replaces the MAP estimator with a sequential MAP (SMAP) estimator derived from a novel estimation criteria. Together, the proposed estimator and model result in a segmentation algorithm which is not iterative and can be computed in time proportional to MN where M is the number of classes and N is the number of pixels. We also develop a computationally effcient method for unsupervised estimation of m...
A generalized Gaussian image model for edgepreserving MAP estimation
 IEEE Trans. on Image Processing
, 1993
"... Absfrucf We present a Markov random field model which allows realistic edge modeling while providing stable maximum a posteriori MAP solutions. The proposed model, which we refer to as a generalized Gaussian Markov random field (GGMRF), is named for its similarity to the generalized Gaussian distri ..."
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Cited by 301 (37 self)
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Absfrucf We present a Markov random field model which allows realistic edge modeling while providing stable maximum a posteriori MAP solutions. The proposed model, which we refer to as a generalized Gaussian Markov random field (GGMRF), is named for its similarity to the generalized Gaussian distribution used in robust detection and estimation. The model satisifies several desirable analytical and computational properties for MAP estimation, including continuous dependence of the estimate on the data, invariance of the character of solutions to scaling of data, and a solution which lies at the unique global minimum of the U posteriori loglikeihood function. The GGMRF is demonstrated to be useful for image reconstruction in lowdosage transmission tomography. I.
A Probabilistic Framework for SemiSupervised Clustering
, 2004
"... Unsupervised clustering can be significantly improved using supervision in the form of pairwise constraints, i.e., pairs of instances labeled as belonging to same or different clusters. In recent years, a number of algorithms have been proposed for enhancing clustering quality by employing such supe ..."
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Cited by 275 (14 self)
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Unsupervised clustering can be significantly improved using supervision in the form of pairwise constraints, i.e., pairs of instances labeled as belonging to same or different clusters. In recent years, a number of algorithms have been proposed for enhancing clustering quality by employing such supervision. Such methods use the constraints to either modify the objective function, or to learn the distance measure. We propose a probabilistic model for semisupervised clustering based on Hidden Markov Random Fields (HMRFs) that provides a principled framework for incorporating supervision into prototypebased clustering. The model generalizes a previous approach that combines constraints and Euclidean distance learning, and allows the use of a broad range of clustering distortion measures, including Bregman divergences (e.g., Euclidean distance and Idivergence) and directional similarity measures (e.g., cosine similarity). We present an algorithm that performs partitional semisupervised clustering of data by minimizing an objective function derived from the posterior energy of the HMRF model. Experimental results on several text data sets demonstrate the advantages of the proposed framework. 1.
Hidden Markov processes
 IEEE Trans. Inform. Theory
, 2002
"... Abstract—An overview of statistical and informationtheoretic aspects of hidden Markov processes (HMPs) is presented. An HMP is a discretetime finitestate homogeneous Markov chain observed through a discretetime memoryless invariant channel. In recent years, the work of Baum and Petrie on finite ..."
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Cited by 264 (5 self)
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Abstract—An overview of statistical and informationtheoretic aspects of hidden Markov processes (HMPs) is presented. An HMP is a discretetime finitestate homogeneous Markov chain observed through a discretetime memoryless invariant channel. In recent years, the work of Baum and Petrie on finitestate finitealphabet HMPs was expanded to HMPs with finite as well as continuous state spaces and a general alphabet. In particular, statistical properties and ergodic theorems for relative entropy densities of HMPs were developed. Consistency and asymptotic normality of the maximumlikelihood (ML) parameter estimator were proved under some mild conditions. Similar results were established for switching autoregressive processes. These processes generalize HMPs. New algorithms were developed for estimating the state, parameter, and order of an HMP, for universal coding and classification of HMPs, and for universal decoding of hidden Markov channels. These and other related topics are reviewed in this paper. Index Terms—Baum–Petrie algorithm, entropy ergodic theorems, finitestate channels, hidden Markov models, identifiability, Kalman filter, maximumlikelihood (ML) estimation, order estimation, recursive parameter estimation, switching autoregressive processes, Ziv inequality. I.
Simultaneous Truth and Performance Level Estimation (STAPLE): An Algorithm for the Validation of Image Segmentation
 IEEE TRANS. MED. IMAG
, 2004
"... Characterizing the performance of image segmentation approaches has been a persistent challenge. Performance analysis is important since segmentation algorithms often have limited accuracy and precision. Interactive drawing of the desired segmentation by human raters has often been the only acceptab ..."
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Cited by 250 (21 self)
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Characterizing the performance of image segmentation approaches has been a persistent challenge. Performance analysis is important since segmentation algorithms often have limited accuracy and precision. Interactive drawing of the desired segmentation by human raters has often been the only acceptable approach, and yet suffers from intrarater and interrater variability. Automated algorithms have been sought in order to remove the variability introduced by raters, but such algorithms must be assessed to ensure they are suitable for the task. The performance of raters...
Image Change Detection Algorithms: A Systematic Survey
 IEEE Transactions on Image Processing
, 2005
"... Detecting regions of change in multiple images of the same scene taken at different times is of widespread interest due to a large number of applications in diverse disciplines, including remote sensing, surveillance, medical diagnosis and treatment, civil infrastructure, and underwater sensing. T ..."
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Cited by 236 (3 self)
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Detecting regions of change in multiple images of the same scene taken at different times is of widespread interest due to a large number of applications in diverse disciplines, including remote sensing, surveillance, medical diagnosis and treatment, civil infrastructure, and underwater sensing. This paper presents a systematic survey of the common processing steps and core decision rules in modern change detection algorithms, including significance and hypothesis testing, predictive models, the shading model, and background modeling. We also discuss important preprocessing methods, approaches to enforcing the consistency of the change mask, and principles for evaluating and comparing the performance of change detection algorithms. It is hoped that our classification of algorithms into a relatively small number of categories will provide useful guidance to the algorithm designer.