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698
Graph visualization and navigation in information visualization: A survey.
- Internet Available: http://citeseer.ist.psu.edu/ herman00graph.html (23
, 2000
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An open graph visualization system and its applications to software engineering
- SOFTWARE - PRACTICE AND EXPERIENCE
, 2000
"... We describe a package of practical tools and libraries for manipulating graphs and their drawings. Our design, which aimed at facilitating the combination of the package components with other tools, includes stream and event interfaces for graph operations, high-quality static and dynamic layout alg ..."
Abstract
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Cited by 453 (9 self)
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We describe a package of practical tools and libraries for manipulating graphs and their drawings. Our design, which aimed at facilitating the combination of the package components with other tools, includes stream and event interfaces for graph operations, high-quality static and dynamic layout algorithms, and the ability to handle sizable graphs. We conclude with a description of the applications of this package to a variety of software engineering tools.
Knowledge Networks as Channels and Conduits: The Effects of Spillovers in the Boston Biotechnology Community
, 2004
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Mapping the structural core of human cerebral cortex
- PLoS Biol
"... Structurally segregated and functionally specialized regions of the human cerebral cortex are interconnected by a dense network of cortico-cortical axonal pathways. By using diffusion spectrum imaging, we noninvasively mapped these pathways within and across cortical hemispheres in individual human ..."
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Cited by 221 (4 self)
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Structurally segregated and functionally specialized regions of the human cerebral cortex are interconnected by a dense network of cortico-cortical axonal pathways. By using diffusion spectrum imaging, we noninvasively mapped these pathways within and across cortical hemispheres in individual human participants. An analysis of the resulting large-scale structural brain networks reveals a structural core within posterior medial and parietal cerebral cortex, as well as several distinct temporal and frontal modules. Brain regions within the structural core share high degree, strength, and betweenness centrality, and they constitute connector hubs that link all major structural modules. The structural core contains brain regions that form the posterior components of the human default network. Looking both within and outside of core regions, we observed a substantial correspondence between structural connectivity and resting-state functional connectivity measured in the same participants. The spatial and topological centrality of the core within cortex suggests an important role in functional integration.
Network dynamics and field evolution: The growth of interorganizational collaboration in the life sciences
- AMERICAN JOURNAL OF SOCIOLOGY
, 2005
"... A recursive analysis of network and institutional evolution is offered to account for the decentralized structure of the commercial field of the life sciences. Four alternative logics of attachment—accumulative advantage, homophily, follow-the-trend, and multiconnectivity—are tested to explain the s ..."
Abstract
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Cited by 184 (8 self)
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A recursive analysis of network and institutional evolution is offered to account for the decentralized structure of the commercial field of the life sciences. Four alternative logics of attachment—accumulative advantage, homophily, follow-the-trend, and multiconnectivity—are tested to explain the structure and dynamics of interorganizational collaboration in biotechnology. Using multiple novel methods, the authors demonstrate how different rules for affiliation shape network evolution. Commercialization strategies pursued by early corporate entrants are supplanted by universities, research institutes, venture capital, and small firms. As organizations increase their collaborative activities and diversify their ties to others, cohesive subnetworks form, characterized by multiple, independent pathways. These structural components, in turn, condition the choices and opportunities available to members of a field, thereby reinforcing an attachment logic based on differential connections to diverse partners.
Big-Bang Simulation for Embedding Network Distances in Euclidean Space
, 2004
"... Embedding of a graph metric in Euclidean space efficiently and accurately is an important problem in general with applications in topology aggregation, closest mirror selection, and application level routing. We propose a new graph embedding scheme called Big-Bang Simulation (BBS), which simulates a ..."
Abstract
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Cited by 151 (4 self)
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Embedding of a graph metric in Euclidean space efficiently and accurately is an important problem in general with applications in topology aggregation, closest mirror selection, and application level routing. We propose a new graph embedding scheme called Big-Bang Simulation (BBS), which simulates an explosion of particles under force field derived from embedding error. BBS is shown to be significantly more accurate, compared to all other embedding methods including GNP. We report an extensive simulation study of BBS compared with several known embedding schemes and show its advantage for distance estimation (as in the IDMaps project), mirror selection and topology aggregation.
A fast adaptive layout algorithm for undirected graphs
, 1995
"... Abstract. We present a randomized adaptive layout algorithm for nicely drawing undirected graphs that is based on the spring-embedder paradigm and contains several new heuristics to improve the convergence, including local temperatures, gravitational forces and the detection of rotations and oscilla ..."
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Cited by 133 (1 self)
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Abstract. We present a randomized adaptive layout algorithm for nicely drawing undirected graphs that is based on the spring-embedder paradigm and contains several new heuristics to improve the convergence, including local temperatures, gravitational forces and the detection of rotations and oscillations. The proposed algorithm achieves drawings of high quality on a wide range of graphs with standard settings. Moreover, the algorithm is fast, being thus applicable on general undirected graphs of substantially larger size and complexity than before [9, 6, 3]. Aesthetically pleasing solutions are found in most cases. We give empirical data for the running time of the algorithm and the quality of the computed layouts. 1
Small-world anatomical networks in the human brain revealed by cortical thickness from MRI. Cerebral Cortex. Advance access published online January 4
, 2007
"... An important issue in neuroscience is the characterization for the underlying architectures of complex brain networks. However, little is known about the network of anatomical connections in the human brain. Here, we investigated large-scale anatomical connection patterns of the human cerebral corte ..."
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Cited by 111 (10 self)
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An important issue in neuroscience is the characterization for the underlying architectures of complex brain networks. However, little is known about the network of anatomical connections in the human brain. Here, we investigated large-scale anatomical connection patterns of the human cerebral cortex using cortical thickness measurements from magnetic resonance images. Two areas were considered anatomically connected if they showed statistically significant correlations in cortical thickness and we constructed the network of such connections using 124 brains from the International Consortium for Brain Mapping database. Significant short- and long-range connections were found in both intra- and interhemispheric regions, many of which were consistent with known neuroanatomical pathways measured by human diffusion imaging. More importantly, we showed that the human brain anatomical network had robust small-world properties with cohesive neighborhoods and short mean distances between regions that were insensitive to the selection of correlation thresholds. Additionally, we also found that this network and the probability of finding a connection between 2 regions for a given anatomical distance had both exponentially truncated power-law distributions. Our results demonstrated the basic organizational principles for the anatomical network in the human brain compatible with previous functional networks studies, which provides important implications of how functional brain states originate from their structural underpinnings. To our knowledge, this study provides the first report of small-world properties and degree distribution of anatomical networks in the human brain using cortical thickness measurements.
