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A tutorial on particle filters for online nonlinear/nonGaussian Bayesian tracking
 IEEE TRANSACTIONS ON SIGNAL PROCESSING
, 2002
"... Increasingly, for many application areas, it is becoming important to include elements of nonlinearity and nonGaussianity in order to model accurately the underlying dynamics of a physical system. Moreover, it is typically crucial to process data online as it arrives, both from the point of view o ..."
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Cited by 1974 (2 self)
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Increasingly, for many application areas, it is becoming important to include elements of nonlinearity and nonGaussianity in order to model accurately the underlying dynamics of a physical system. Moreover, it is typically crucial to process data online as it arrives, both from the point of view of storage costs as well as for rapid adaptation to changing signal characteristics. In this paper, we review both optimal and suboptimal Bayesian algorithms for nonlinear/nonGaussian tracking problems, with a focus on particle filters. Particle filters are sequential Monte Carlo methods based on point mass (or “particle”) representations of probability densities, which can be applied to any statespace model and which generalize the traditional Kalman filtering methods. Several variants of the particle filter such as SIR, ASIR, and RPF are introduced within a generic framework of the sequential importance sampling (SIS) algorithm. These are discussed and compared with the standard EKF through an illustrative example.
Gradientbased learning applied to document recognition
 Proceedings of the IEEE
, 1998
"... Multilayer neural networks trained with the backpropagation algorithm constitute the best example of a successful gradientbased learning technique. Given an appropriate network architecture, gradientbased learning algorithms can be used to synthesize a complex decision surface that can classify hi ..."
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Cited by 1465 (84 self)
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Multilayer neural networks trained with the backpropagation algorithm constitute the best example of a successful gradientbased learning technique. Given an appropriate network architecture, gradientbased learning algorithms can be used to synthesize a complex decision surface that can classify highdimensional patterns, such as handwritten characters, with minimal preprocessing. This paper reviews various methods applied to handwritten character recognition and compares them on a standard handwritten digit recognition task. Convolutional neural networks, which are specifically designed to deal with the variability of two dimensional (2D) shapes, are shown to outperform all other techniques. Reallife document recognition systems are composed of multiple modules including field extraction, segmentation, recognition, and language modeling. A new learning paradigm, called graph transformer networks (GTN’s), allows such multimodule systems to be trained globally using gradientbased methods so as to minimize an overall performance measure. Two systems for online handwriting recognition are described. Experiments demonstrate the advantage of global training, and the flexibility of graph transformer networks. A graph transformer network for reading a bank check is also described. It uses convolutional neural network character recognizers combined with global training techniques to provide record accuracy on business and personal checks. It is deployed commercially and reads several million checks per day.
What is a hidden Markov model?
, 2004
"... Often, problems in biological sequence analysis are just a matter of putting the right label on each residue. In gene identification, we want to label nucleotides as exons, introns, or intergenic sequence. In sequence alignment, we want to associate residues in a query sequence with homologous resi ..."
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Cited by 1333 (8 self)
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Often, problems in biological sequence analysis are just a matter of putting the right label on each residue. In gene identification, we want to label nucleotides as exons, introns, or intergenic sequence. In sequence alignment, we want to associate residues in a query sequence with homologous residues in a target database sequence. We can always write an ad hoc program for any given problem, but the same potentially frustrating issues will always recur. One issue is that we often want to incorporate multiple heterogenous sources of information. A genefinder, for instance, ought to combine splice site consenses, codon bias, exon/intron length preferences, and open reading frame analysis all in one scoring system. How should all those parameters be set? How should different kinds of information be weighted? A second issue is being able to interpret results probabilistically. Finding a best scoring answer is one thing, but what does the score mean, and how confident are we that the best answer, or any given part of it, is correct? A third issue is extensibility. The moment we perfect our ad hoc genefinder, we wish we had also modeled translational initiation consensus, alternative splicing, and a polyadenylation signal. All too often, piling more reality onto a fragile ad hoc program makes it collapse under its own weight. Hidden Markov models (HMMs) are a formal foundation for making probabilistic models of
Prediction of complete gene structures in human genomic DNA
 J. Mol. Biol
, 1997
"... The problem of identifying genes in genomic DNA sequences by computational methods has attracted considerable research attention in recent years. From one point of view, the problem is closely ..."
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Cited by 1160 (9 self)
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The problem of identifying genes in genomic DNA sequences by computational methods has attracted considerable research attention in recent years. From one point of view, the problem is closely
Planning and acting in partially observable stochastic domains
 ARTIFICIAL INTELLIGENCE
, 1998
"... In this paper, we bring techniques from operations research to bear on the problem of choosing optimal actions in partially observable stochastic domains. We begin by introducing the theory of Markov decision processes (mdps) and partially observable mdps (pomdps). We then outline a novel algorithm ..."
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Cited by 1089 (42 self)
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In this paper, we bring techniques from operations research to bear on the problem of choosing optimal actions in partially observable stochastic domains. We begin by introducing the theory of Markov decision processes (mdps) and partially observable mdps (pomdps). We then outline a novel algorithm for solving pomdps offline and show how, in some cases, a finitememory controller can be extracted from the solution to a pomdp. We conclude with a discussion of how our approach relates to previous work, the complexity of finding exact solutions to pomdps, and of some possibilities for finding approximate solutions.
KernelBased Object Tracking
, 2003
"... A new approach toward target representation and localization, the central component in visual tracking of nonrigid objects, is proposed. The feature histogram based target representations are regularized by spatial masking with an isotropic kernel. The masking induces spatiallysmooth similarity fu ..."
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Cited by 889 (4 self)
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A new approach toward target representation and localization, the central component in visual tracking of nonrigid objects, is proposed. The feature histogram based target representations are regularized by spatial masking with an isotropic kernel. The masking induces spatiallysmooth similarity functions suitable for gradientbased optimization, hence, the target localization problem can be formulated using the basin of attraction of the local maxima. We employ a metric derived from the Bhattacharyya coefficient as similarity measure, and use the mean shift procedure to perform the optimization. In the presented tracking examples the new method successfully coped with camera motion, partial occlusions, clutter, and target scale variations. Integration with motion filters and data association techniques is also discussed. We describe only few of the potential applications: exploitation of background information, Kalman tracking using motion models, and face tracking. Keywords: nonrigid object tracking; target localization and representation; spatiallysmooth similarity function; Bhattacharyya coefficient; face tracking. 1
Predicting Transmembrane Protein Topology with a Hidden Markov Model: Application to Complete Genomes
 J. MOL. BIOL
, 2001
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Dynamic Bayesian Networks: Representation, Inference and Learning
, 2002
"... Modelling sequential data is important in many areas of science and engineering. Hidden Markov models (HMMs) and Kalman filter models (KFMs) are popular for this because they are simple and flexible. For example, HMMs have been used for speech recognition and biosequence analysis, and KFMs have bee ..."
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Cited by 758 (3 self)
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Modelling sequential data is important in many areas of science and engineering. Hidden Markov models (HMMs) and Kalman filter models (KFMs) are popular for this because they are simple and flexible. For example, HMMs have been used for speech recognition and biosequence analysis, and KFMs have been used for problems ranging from tracking planes and missiles to predicting the economy. However, HMMs
and KFMs are limited in their “expressive power”. Dynamic Bayesian Networks (DBNs) generalize HMMs by allowing the state space to be represented in factored form, instead of as a single discrete random variable. DBNs generalize KFMs by allowing arbitrary probability distributions, not just (unimodal) linearGaussian. In this thesis, I will discuss how to represent many different kinds of models as DBNs, how to perform exact and approximate inference in DBNs, and how to learn DBN models from sequential data.
In particular, the main novel technical contributions of this thesis are as follows: a way of representing
Hierarchical HMMs as DBNs, which enables inference to be done in O(T) time instead of O(T 3), where T is the length of the sequence; an exact smoothing algorithm that takes O(log T) space instead of O(T); a simple way of using the junction tree algorithm for online inference in DBNs; new complexity bounds on exact online inference in DBNs; a new deterministic approximate inference algorithm called factored frontier; an analysis of the relationship between the BK algorithm and loopy belief propagation; a way of
applying RaoBlackwellised particle filtering to DBNs in general, and the SLAM (simultaneous localization
and mapping) problem in particular; a way of extending the structural EM algorithm to DBNs; and a variety of different applications of DBNs. However, perhaps the main value of the thesis is its catholic presentation of the field of sequential data modelling.
SemiSupervised Learning Literature Survey
, 2006
"... We review the literature on semisupervised learning, which is an area in machine learning and more generally, artificial intelligence. There has been a whole
spectrum of interesting ideas on how to learn from both labeled and unlabeled data, i.e. semisupervised learning. This document is a chapter ..."
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Cited by 757 (8 self)
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We review the literature on semisupervised learning, which is an area in machine learning and more generally, artificial intelligence. There has been a whole
spectrum of interesting ideas on how to learn from both labeled and unlabeled data, i.e. semisupervised learning. This document is a chapter excerpt from the author’s
doctoral thesis (Zhu, 2005). However the author plans to update the online version frequently to incorporate the latest development in the field. Please obtain the latest
version at http://www.cs.wisc.edu/~jerryzhu/pub/ssl_survey.pdf
Incorporating nonlocal information into information extraction systems by gibbs sampling
 In ACL
, 2005
"... Most current statistical natural language processing models use only local features so as to permit dynamic programming in inference, but this makes them unable to fully account for the long distance structure that is prevalent in language use. We show how to solve this dilemma with Gibbs sampling, ..."
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Cited by 696 (25 self)
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Most current statistical natural language processing models use only local features so as to permit dynamic programming in inference, but this makes them unable to fully account for the long distance structure that is prevalent in language use. We show how to solve this dilemma with Gibbs sampling, a simple Monte Carlo method used to perform approximate inference in factored probabilistic models. By using simulated annealing in place of Viterbi decoding in sequence models such as HMMs, CMMs, and CRFs, it is possible to incorporate nonlocal structure while preserving tractable inference. We use this technique to augment an existing CRFbased information extraction system with longdistance dependency models, enforcing label consistency and extraction template consistency constraints. This technique results in an error reduction of up to 9 % over stateoftheart systems on two established information extraction tasks. 1