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Combined micro-Fourier transform infrared (FTIR) spectroscopy and micro-Raman spectroscopy of Proterozoic acritarchs: a new approach to Palaeobiology. (2005)

by C P Marshall, E J Javaux, A H Knoll, M R Walter
Venue:Precambrian Research
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Novel application of focused ion beam electron microscopy (FIB-EM) in preparation and analysis of microfossil ultrastructures: A new view of complexity in early eukaryotic organisms

by James D. Schiffbauer, Shuhai Xiao - Palaios 2009
"... Coupled dual-beam focused ion beam electron microscopy (FIB-EM) has gained popularity across multiple disciplines over the past decade. Widely utilized as a stand-alone instrument for micromachining and metal or insulator deposition in numerous industries, the submicron-scale ion milling and cutting ..."
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Coupled dual-beam focused ion beam electron microscopy (FIB-EM) has gained popularity across multiple disciplines over the past decade. Widely utilized as a stand-alone instrument for micromachining and metal or insulator deposition in numerous industries, the submicron-scale ion milling and cutting capabilities of FIB-EM systems have been well documented in the materials science literature. These capacities make FIB-EM a powerful tool for in situ, site-specific transmission electron microscopy (TEM) ultrathin foil preparation. Recent advancements in the field-emission guns (FEGs) of FIB-EM systems have provided spatial resolution comparable to that of many high-end scanning electron microscopes (SEM), thus providing enhanced imaging capacities with material deposition and material removal capabilities. More recently, FIB-EM preparation techniques have been applied to geological samples to characterize mineral inclusions, grain boundaries, and microfossils. Here, we demonstrate a novel method for analyzing three-dimensional (3-D) ultrastructures of microfossils using FIB-EM. Our method, FIB-EM nanotomography, consists of sequential ion milling, or cross sectioning, and concurrent SEM imaging. This technique with coupled dual-beam systems allows for real-time, 3-D ultrastructural analysis and composi-tional mapping with precise site selectivity and may provide new insights in fossil ultrastructures. Using the FIB-EM nanotomography method, we investigated herkomorphic and acanthomorphic acritarchs (organic-walled microfossils) extracted from the $999 Ma Mesoproterozoic Ruyang Group of North China. The 3-D characteristics of such important but controversial acritarch features as processes and vesicularly enclosed central bodies are described. Through these case studies, we demonstrate that FIB-EM nanotomography is a powerful and useful tool for investigating the three-dimensionality of microfossil ultra- and nano-structures.

Research Article DOI: 10.2110/palo.2011.p11-110r THE END OF A MYTH: ARPYLORUS ANTIQUUS PALEOZOIC DINOFLAGELLATE CYST

by Alain Le Herisse, Edwige Masure, Emmanuelle J. Javaux, Craig P. Marshall
"... Arpylorus antiquus, erected by Calandra in 1964, was isolated from upper Silurian sedimentary rocks from the Mechiguig 1 borehole in southern Tunisia, with other palynomorphs. The folded vesicle and the quadran-gular form of the aperture break down into platelike fragments, re-sembling the tabulatio ..."
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Arpylorus antiquus, erected by Calandra in 1964, was isolated from upper Silurian sedimentary rocks from the Mechiguig 1 borehole in southern Tunisia, with other palynomorphs. The folded vesicle and the quadran-gular form of the aperture break down into platelike fragments, re-sembling the tabulation of dinoflagellates. The presence of these ele-ments has been used to interpret A. antiquus as a dinoflagellate cyst. The morphology and affinity of A. antiquus is reinterpreted herein based on investigation of larger sets of samples, including material from the type locality, together with material of Algeria, Saudi Arabia, and Brazil. More complete specimens than those previously described have been observed using gentle laboratory techniques, showing a large development of a fine membrane at the periphery of vesicles. This element was destroyed using classical palynological treatments, implying that the holotype is an incomplete specimen. The membrane at the periphery of

Characterization of permineralized kerogen from an Eocene fossil fern

by Andrew D Czaja , Anatoliy B Kudryavtsev , George D Cody , J William Schopf
"... a b s t r a c t The processes of organic maturation that occur during the permineralization of fossils and the detailed chemistry of the resulting products are incompletely understood. Primary among such processes is the geochemical alteration of biological matter to produce kerogen, such as that w ..."
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a b s t r a c t The processes of organic maturation that occur during the permineralization of fossils and the detailed chemistry of the resulting products are incompletely understood. Primary among such processes is the geochemical alteration of biological matter to produce kerogen, such as that which comprises the cell walls of the fossils studied here: essentially unmetamorphosed, Eocene plant axes (specimens of the fossil fern Dennstaedtiopsis aerenchymata cellularly permineralized in cherts of the Clarno Formation of Oregon and the Allenby Formation of British Columbia). The composition and molecular structure of the kerogen that comprises the cell walls of such axes were analyzed using ultraviolet Raman spectroscopy (UV-Raman), solid state 13 C nuclear magnetic resonance spectroscopy ( 13 C NMR) and pyrolysis-gas chromatography-mass spectrometry (py-GC-MS). Cellularly well-preserved fern axes from both geologic units exhibit similar overall molecular structure, being composed primarily of networks of aromatic rings and polyene chains that, unlike more mature kerogens, lack large polycyclic aromatic hydrocarbon (PAH) constituents. The cell walls of the Allenby Formation specimens are, however, less altered than those of the Clarno chert, exhibiting more prevalent oxygen-containing and alkyl functional groups and comprising a greater fraction of rock mass. The study represents the first demonstration of the effectiveness (and limitations) of the combined use of UV-Raman, 13 C NMR and py-GC-MS for the analysis of the kerogenous cell walls of chert-permineralized vascular plants.
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... coals (e.g., Snape et al., 1979), fossil spores (e.g., Hemsley et al., 1995, 1996) and fossil leaves (van Bergen et al., 1994b; Lyons et al., 1995; Briggs, 1999; Almendros et al., 2005; Gupta et al., 2007c). Similarly, py–GC–MS has been used extensively to analyze the organic components of fossil plants and other kerogenous materials (e.g., Hatcher et al., 1988; Faix et al., 1990; Rullkötter and Michaelis, 1990; Ralph and Hatfield, 1991; Greenwood et al., 1993; van Bergen et al., 1994a,b, 1997; Lyons et al., 1995; Stankiewicz et al., 1996, 1997, 1998, 2000; Briggs et al., 1998; Briggs, 1999; Marshall et al., 2005b; Gupta et al., 2006a,b, 2007a,b,c,d, 2008a,b; Boyce et al., 2007; Dutta et al., 2007; Jacob et al., 2007). We show here that UV–Raman, 13C NMR and py–GC–MS can provide mutually reinforcing lines of data regarding the geochemical characteristics of the carbonaceous matter that comprises fossil plants. In a given fossil plant specimen, Raman spectroscopy can provide information about the molecular structure of its kerogenous constituents; 13C NMR can provide additional information about such molecular structure, as well as evidence of the types and quantities of carbon moieties present (aromat...

Infrared Spectroscopic Characterization of Organic Matter Associated with Microbial Bioalteration Textures

by How To Cite, In Basaltic Glass, L. J. Preston, M. R. M. Izawa, N. R. Banerjee
"... and other research outputs Infrared spectroscopic characterization of organic matter associated with microbial bioalteration textures in basaltic glass ..."
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and other research outputs Infrared spectroscopic characterization of organic matter associated with microbial bioalteration textures in basaltic glass
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...produced CH 2/CH 3 band intensity ratios of 4.9, 4.2, and 4.4, respectively. A CH2/ CH3 ratio £ 2 signifies a biopolymer containing shorter and more branched aliphatic structures (Lin and Ritz, 1993; =-=Marshall et al., 2005-=-). The ratio values of this study are considered moderately high as described for Tasmanites by Lin and Ritz (1993), which implies that a biopolymer is present within the tubules consisting of aliphat...

Research Articles Infrared Spectroscopic Characterization of Organic Matter Associated with Microbial Bioalteration Textures

by How To Cite, In Basaltic Glass
"... and other research outputs Infrared spectroscopic characterization of organic mat-ter associated with microbial bioalteration textures in basaltic glass ..."
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and other research outputs Infrared spectroscopic characterization of organic mat-ter associated with microbial bioalteration textures in basaltic glass
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...13 produced CH2/CH3 band intensity ratios of 4.9, 4.2, and 4.4, respectively. A CH2/ CH3 ratio£ 2 signifies a biopolymer containing shorter and more branched aliphatic structures (Lin and Ritz, 1993; =-=Marshall et al., 2005-=-). The ratio values of this study are considered moderately high as described for Tasmanites by Lin and Ritz (1993), which implies that a biopolymer is present within the tubules consisting of aliphat...

and Officer Basin, South Australia

by Andrew C. Hill, Peter W. Haines, Kathleen Grey, Sebastian Willman , 2007
"... Abstract–New occurrences of the Acraman impact ejecta layer were recently discovered in two South Australian drillholes, SCYW-79 1a (Stuart Shelf) and Munta 1 (Officer Basin) using lithostratigraphy, acritarch biostratigraphy, carbon isotope stratigraphy, and biomarker anomalies to predict the strat ..."
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Abstract–New occurrences of the Acraman impact ejecta layer were recently discovered in two South Australian drillholes, SCYW-79 1a (Stuart Shelf) and Munta 1 (Officer Basin) using lithostratigraphy, acritarch biostratigraphy, carbon isotope stratigraphy, and biomarker anomalies to predict the stratigraphic position. The ejecta layer is conspicuous because it consists of pink, sand-sized, angular fragments of volcanic rock distributed along the bedding plane surface of green marine siltstone. In SCYW-79 1a it forms a layer 5 mm thick; in Munta 1 the ejecta layer is thin and discontinuous because of its distance (~550 km) from the impact structure. Palynological, biomarker, and carbon isotope anomalies can now be shown to coincide with the ejecta layer in SCYW-79 1a and Munta 1 suggesting the Acraman impact event may have had far reaching influences on the rapidly evolving Ediacaran biological and geochemical cycles.
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...overished state of the biota immediately following glaciation. In Australia, there is an evolutionary diversification of large complex acritarchs (acanthomorphs, probable phytoplanktonic green algae [=-=Marshall et al. 2005-=-]) just above the ejecta layer (Grey et al. 2003; Grey 2005; Willman et al. 2006). Several of the taxa recorded in Australia are also known from Siberia (Moczyd≥owska et al. 1993), China (Zhang et al....

Ediacaran Microfossils from the Ura Formation, Baikal-Patom Uplift, Siberia: Taxonomy and Biostratigraphic Significance

by Citation Sergeev, Vladimir N, Andrew H. Knoll , 2016
"... (Article begins on next page) The Harvard community has made this article openly available. Please share how this access benefits you. Your story matters. ..."
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(Article begins on next page) The Harvard community has made this article openly available. Please share how this access benefits you. Your story matters.

Accepted for the Council:

by Miles Anthony Henderson, Miles Anthony, A Morphological, Geochemical Investigation, Grypania Implications, Early Earth, Dixie L. Thompson, Christopher M. Fedo , 2010
"... This Thesis is brought to you for free and open access by the Graduate School at Trace: Tennessee Research and Creative Exchange. It has been ..."
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This Thesis is brought to you for free and open access by the Graduate School at Trace: Tennessee Research and Creative Exchange. It has been

Affinity, life cycle, and intracellular complexity of organic-walled microfossils from the Mesoproterozoic of Shanxi, China

by Heda Agić, Małgorzata Moczydłowska, Lei-ming Yin
"... Abstract.—Light microscope and scanning electron microscope observations on new material of unicellular microfossils Dictyosphaera macroreticulata and Shuiyousphaeridium macroreticulatum, from the Mesoproterozoic Ruyang Group in China, provide insights into the microorganisms ’ biological affinity, ..."
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Abstract.—Light microscope and scanning electron microscope observations on new material of unicellular microfossils Dictyosphaera macroreticulata and Shuiyousphaeridium macroreticulatum, from the Mesoproterozoic Ruyang Group in China, provide insights into the microorganisms ’ biological affinity, life cycle and cellular complexity. Gigantosphaeridium fibratum n. gen. et sp., is described and is one of the largest Mesoproterozoic microfossils recorded. Phenotypic characters of vesicle ornamentation and excystment structures, properties of resistance and cell wall structure in Dictyosphaera and Shuiyousphaeridium are all diagnostic of microalgal cysts. The wide size ranges of the various morphotypes indicate growth phases compatible with the development of reproductive cysts. Conspecific biologically, each morphotype represents an asexual (resting cyst) or sexual (zygotic cyst) stage in the life cycle, respectively. We reconstruct this hypothetical life cycle and infer that the organism demonstrates a reproductive strategy of alternation of heteromorphic generations. Similarly in Gigantosphaeridium, a metabolically expensive vesicle with processes suggests its protective role as a zygotic cyst. In combination with all these characters and from the resemblance to extant green algae, we propose the placement of these ancient microorganisms in the stem group of Chloroplastida (Viridiplantae). A cell wall composed of primary and secondary layers in Dictyosphaera and Shuiyouisphaeridium required a high cellular complexity for their synthesis and the presence of an endomembrane system and the Golgi apparatus. The plastid was also present, accepting the organism was photosynthetic. The biota reveals a high degree of morphological and cell structural complexity, and provides an insight into ongoing eukaryotic evolution and the development of complex life cycles with sexual reproduction by 1200Ma.

Clues

by Józef Kaźmierczak, Barbara Kremer
"... Paleozoic acritarchs: ..."
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Paleozoic acritarchs:
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