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Phase retrieval with application to optical imaging: a contemporary overview (2014)

by Y Shechtman
Venue:IEEE Signal Process. Mag
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Phase Retrieval via Wirtinger Flow: Theory and Algorithms

by Emmanuel J. Candès, et al. , 2014
"... We study the problem of recovering the phase from magnitude measurements; specifically, we wish to reconstruct a complex-valued signal x ∈ Cn about which we have phaseless samples of the form yr = ∣⟨ar,x⟩∣2, r = 1,...,m (knowledge of the phase of these samples would yield a linear system). This pape ..."
Abstract - Cited by 24 (4 self) - Add to MetaCart
We study the problem of recovering the phase from magnitude measurements; specifically, we wish to reconstruct a complex-valued signal x ∈ Cn about which we have phaseless samples of the form yr = ∣⟨ar,x⟩∣2, r = 1,...,m (knowledge of the phase of these samples would yield a linear system). This paper develops a non-convex formulation of the phase retrieval problem as well as a concrete solution algorithm. In a nutshell, this algorithm starts with a careful initialization obtained by means of a spectral method, and then refines this initial estimate by iteratively applying novel update rules, which have low computational complexity, much like in a gradient descent scheme. The main contribution is that this algorithm is shown to rigorously allow the exact retrieval of phase information from a nearly minimal number of random measurements. Indeed, the sequence of successive iterates provably converges to the solution at a geometric rate so that the proposed scheme is efficient both in terms of computational and data resources. In theory, a variation on this scheme leads to a near-linear time algorithm for a physically realizable model based on coded diffraction patterns. We illustrate the effectiveness of our methods with various experiments on image data. Underlying our analysis are insights for the analysis of non-convex optimization schemes that may have implications for computational problems beyond phase retrieval.

Low rank matrix recovery from rank one measurements

by Richard Kueng, Holger Rauhut, Ulrich Terstiege , 2014
"... ar ..."
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...trieving a complex signal from measurements that are ignorant towards phases is abundant in many different areas of science, such as X-ray cristallography [40, 57], astronomy [29] diffraction imaging =-=[67, 57]-=- and more [8, 12, 76]. Mathematically formulated, the problem consists of recovering a complex signal (vector) x ∈ Cn from measurements of the form |〈aj , x〉|2 = bj for j = 1, . . . ,m, (1) where a1, ...

Solving Random Quadratic Systems of Equations is nearly as easy as . . .

by Yuxin Chen, Emmanuel Candès , 2015
"... We consider the fundamental problem of solving quadratic systems of equations in n variables, where yi = |〈ai,x〉|2, i = 1,...,m and x ∈ Rn is unknown. We propose a novel method, which starting with an initial guess computed by means of a spectral method, proceeds by minimizing a nonconvex functional ..."
Abstract - Cited by 2 (1 self) - Add to MetaCart
We consider the fundamental problem of solving quadratic systems of equations in n variables, where yi = |〈ai,x〉|2, i = 1,...,m and x ∈ Rn is unknown. We propose a novel method, which starting with an initial guess computed by means of a spectral method, proceeds by minimizing a nonconvex functional as in the Wirtinger flow approach [11]. There are several key distinguishing features, most notably, a distinct objective functional and novel update rules, which operate in an adaptive fashion and drop terms bearing too much influence on the search direction. These careful selection rules provide a tighter initial guess, better descent directions, and thus enhanced practical performance. On the theoretical side, we prove that for certain unstructured models of quadratic systems, our algorithms return the correct solution in linear time, i.e. in time proportional to reading the data {ai} and {yi} as soon as the ratio m/n between the number of equations and unknowns exceeds a fixed numerical constant. We extend the theory to deal with noisy systems in which we only have yi ≈ |〈ai,x〉|2 and prove that our algorithms achieve a statistical accuracy, which is nearly un-improvable. We complement our theoretical study with numerical examples showing that solving random quadratic systems is both computationally and statistically not much harder than solving linear systems of the same size—hence the title of this paper. For instance, we

Phase retrieval of sparse signals using optimization transfer and ADMM

by Daniel S Weller , Ayelet Pnueli , Ori Radzyner , Gilad Divon , Yonina C Eldar , Jeffrey A Fessler - in Proc. IEEE Intl. Conf. on Image Processing, 2014
"... ABSTRACT We propose a reconstruction method for the phase retrieval problem prevalent in optics, crystallography, and other imaging applications. Our approach uses signal sparsity to provide robust reconstruction, even in the presence of outliers. Our method is multi-layered, involving multiple ran ..."
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ABSTRACT We propose a reconstruction method for the phase retrieval problem prevalent in optics, crystallography, and other imaging applications. Our approach uses signal sparsity to provide robust reconstruction, even in the presence of outliers. Our method is multi-layered, involving multiple random initial conditions, convex majorization, variable splitting, and alternating directions method of multipliers (ADMM)-based implementation. Monte Carlo simulations demonstrate that our algorithm can correctly and robustly detect sparse signals from full and undersampled sets of squaredmagnitude-only measurements, corrupted by additive noise or outliers.
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...ide robust reconstruction, even in the presence of outliers. Our method is multi-layered, involving multiple random initial conditions, convex majorization, variable splitting, and alternating directions method of multipliers (ADMM)-based implementation. Monte Carlo simulations demonstrate that our algorithm can correctly and robustly detect sparse signals from full and undersampled sets of squaredmagnitude-only measurements, corrupted by additive noise or outliers. Index Terms— phase retrieval, sparse recovery, variable splitting, majorize-minimize, ADMM 1. INTRODUCTION In “phase retrieval,” [1, 2] we aim to reconstruct a length-N signal from M ≤ N magnitude-only samples of a linear transform of that signal. The problem of recovering a signal from the intensity of its Fourier spectrum is prevalent in crystallography [3–5], optics [6], and coherent diffraction imaging [7,8]. Beyond lacking phase information, the measured magnitudes are often noisy in practice. However, noise and outliers pose substantial challenges for many existing methods. Lacking phase information for the measurements, we require some assumptions, or prior information, to reconstruct the signal. A reasonable prior exp...

Sparse Phase Retrieval from Short-Time Fourier Measurements

by Yonina C. Eldar, Pavel Sidorenko, Dustin G. Mixon, Shaby Barel, Oren Cohen
"... Abstract—We consider the classical 1D phase retrieval problem. In order to overcome the difficulties associated with phase re-trieval from measurements of the Fourier magnitude, we treat recovery from the magnitude of the short-time Fourier trans-form (STFT). We first show that the redundancy offere ..."
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Abstract—We consider the classical 1D phase retrieval problem. In order to overcome the difficulties associated with phase re-trieval from measurements of the Fourier magnitude, we treat recovery from the magnitude of the short-time Fourier trans-form (STFT). We first show that the redundancy offered by the STFT enables unique recovery for arbitrary nonvanishing inputs, under mild conditions. An efficient algorithm for recovery of a sparse input from the STFT magnitude is then suggested, based on an adaptation of the recently proposed GESPAR algorithm. We demonstrate through simulations that using the STFT leads to improved performance over recovery from the oversampled Fourier magnitude with the same number of measurements. Index Terms—GESPAR, phase retrieval, short-time Fourier transform, sparsity.
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...curs in many fields of science and engineering, including electron microscopy, crystallography, optical imaging such as coherent diffraction imaging (CDI), and diagnostics of ultra-short laser pulses =-=[21]-=-, [25], [9]. Here, we consider the 1D discrete phase retrieval problem. It is well known that there are many 1D signals with the same Fourier magnitude. This is true even if we eliminate trivial equiv...

Proximal heterogeneous block input-output method and application to blind ptychographic diffraction imaging, arXiv:1408.1887v1

by Robert Hesse, D. Russell, Luke Shoham, Sabach Matthew, K. Tam
"... We propose a general alternating minimization algorithm for nonconvex optimization problems with separable structure and nonconvex coupling between blocks of variables. To fix our ideas, we apply the methodology to the problem of blind ptychographic imaging. Compared to other schemes in the literatu ..."
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We propose a general alternating minimization algorithm for nonconvex optimization problems with separable structure and nonconvex coupling between blocks of variables. To fix our ideas, we apply the methodology to the problem of blind ptychographic imaging. Compared to other schemes in the literature, our approach differs in two ways: (i) it is posed within a clear mathe-matical framework with practically verifiable assumptions, and (ii) under the given assumptions, it is provably convergent to critical points. A numerical comparison of our proposed algorithm with the current state-of-the-art on simulated and experimental data validates our approach and points toward directions for further improvement.
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... Moreover, the prevalence of these two methods in practice ensures that our theoretical framework will have the greatest practical impact. (Which is not to say that the methods are the most efficient =-=[19, 23]-=-.) We present an algorithmic framework in Section 2 by which these algorithms can be understood and analyzed. We present in Section 3 a theory of convergence of the most general Algorithm 2.1 which is...

Algorithms and theory for clustering . . .

by Mahdi Soltanolkotabi , 2014
"... In this dissertation we discuss three problems characterized by hidden structure or information. The first part of this thesis focuses on extracting subspace structures from data. Subspace Clustering is the problem of finding a multi-subspace represen-tation that best fits a collection of points tak ..."
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In this dissertation we discuss three problems characterized by hidden structure or information. The first part of this thesis focuses on extracting subspace structures from data. Subspace Clustering is the problem of finding a multi-subspace represen-tation that best fits a collection of points taken from a high-dimensional space. As with most clustering problems, popular techniques for subspace clustering are often difficult to analyze theoretically as they are often non-convex in nature. Theoret-ical analysis of these algorithms becomes even more challenging in the presence of noise and missing data. We introduce a collection of subspace clustering algorithms, which are tractable and provably robust to various forms of data imperfections. We further illustrate our methods with numerical experiments on a wide variety of data segmentation problems. In the second part of the thesis, we consider the problem of recovering the seem-ingly hidden phase of an object from intensity-only measurements, a problem which naturally appears in X-ray crystallography and related disciplines. We formulate the

Undersampled Phase Retrieval with Outliers

by Daniel S. Weller, Ayelet Pnueli, Gilad Divon, Ori Radzyner, Yonina C. Eldar, Jeffrey A. Fessler - SUBMITTED TO IEEE TRANSACTIONS ON COMPUTATIONAL IMAGING , 2014
"... ..."
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Scalable Convex Methods for Phase Retrieval

by Alp Yurtsever, Ya-ping Hsieh, Volkan Cevher
"... Abstract—This paper describes scalable convex optimization methods for phase retrieval. The main characteristics of these methods are the cheap per-iteration complexity and the low-memory footprint. With a variant of the original PhaseLift formulation, we first illustrate how to leverage the scalabl ..."
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Abstract—This paper describes scalable convex optimization methods for phase retrieval. The main characteristics of these methods are the cheap per-iteration complexity and the low-memory footprint. With a variant of the original PhaseLift formulation, we first illustrate how to leverage the scalable Frank-Wolfe (FW) method (also known as the conditional gradient algorithm), which requires a tuning parameter. We demonstrate that we can estimate the tuning parameter of the FW algorithm directly from the measurements, with rigorous theoretical guarantees. We then illustrate numerically that recent advances in universal primal-dual convex optimization methods offer significant scalability improvements over the FW method, by recovering full HD resolution color images from their quadratic measurements. I.
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...ere ai ∈ Cp are given vectors, and wi model the unknown noise. This problem arises in many applications, including X-ray crystallography, diffraction imaging, astronomical imaging and many others [1]–=-=[5]-=-. As an estimation problem, the nonlinear observation model (1) poses significant difficulties, since the standard maximum likelihood estimators yield in non-convex optimization problems. Convex relax...

scattered light intensity

by Maor Mutzafi, Yoav Shechtman, Yonina C. Eldar, Oren Cohen, Mordechai Segev
"... Deciphering the three-dimensional (3D) structure of complex molecules is of major importance, typically accomplished with X-ray crystallography. Unfortunately, many important molecules cannot be crystallized, hence their 3D structure is unknown. Ankylography presents an alternative, relying on scatt ..."
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Deciphering the three-dimensional (3D) structure of complex molecules is of major importance, typically accomplished with X-ray crystallography. Unfortunately, many important molecules cannot be crystallized, hence their 3D structure is unknown. Ankylography presents an alternative, relying on scattering an ultrashort X-ray pulse off a single molecule before it disintegrates, measuring the far-field intensity on a two-dimensional surface, followed by computation. However, significant information is absent due to lower dimensionality of the measurements and the inability to measure the phase. Recent Ankylography experiments attracted much interest, but it was counter-argued that Ankylography is valid only for objects containing a small number of volume pixels. Here, we propose a sparsity-based approach to reconstruct the 3D structure of molecules. Sparsity is natural for Ankylography, because molecules can be represented compactly in stoichiometric basis. Utilizing sparsity, we surpass current limits on recoverable information by orders of magnitude, paving the way for deciphering the 3D structure of macromolecules.
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