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An Evaluation of the Java-based Approaches to Web Database Access

by Stavros Papastavrou, Panos Chrysanthis, George Samaras, Evaggelia Pitoura , 2001
"... . Given the undeniable popularity of the Web, providing efficient and secure access to remote databases using a Web browser is crucial for the emerging cooperative information systems and applications. In this paper, we evaluate all currently available Java-based approaches that support persisten ..."
Abstract - Cited by 5 (4 self) - Add to MetaCart
. Given the undeniable popularity of the Web, providing efficient and secure access to remote databases using a Web browser is crucial for the emerging cooperative information systems and applications. In this paper, we evaluate all currently available Java-based approaches that support

The Pfam protein families database

by Alex Bateman, Lachlan Coin, Richard Durbin, Robert D. Finn, Volker Hollich, Ajay Khanna, Mhairi Marshall, Simon Moxon, Erik L. L. Sonnhammer, David J. Studholme, Corin Yeats, Sean R. Eddy - Nucleic Acids Res , 2002
"... Pfam is a large collection of protein families and domains. Over the past 2 years the number of families in Pfam has doubled and now stands at 6190 (version 10.0). Methodology improvements for searching the Pfam collection locally as well as via the web are described. Other recent innovations includ ..."
Abstract - Cited by 1070 (39 self) - Add to MetaCart
include modelling of discontinuous domains allow-ing Pfam domain de®nitions to be closer to those found in structure databases. Pfam is available on the web in the UK

LabelMe: A Database and Web-Based Tool for Image Annotation

by B. C. Russell, A. Torralba, K. P. Murphy, W. T. Freeman , 2008
"... We seek to build a large collection of images with ground truth labels to be used for object detection and recognition research. Such data is useful for supervised learning and quantitative evaluation. To achieve this, we developed a web-based tool that allows easy image annotation and instant sha ..."
Abstract - Cited by 679 (46 self) - Add to MetaCart
We seek to build a large collection of images with ground truth labels to be used for object detection and recognition research. Such data is useful for supervised learning and quantitative evaluation. To achieve this, we developed a web-based tool that allows easy image annotation and instant

Pfam protein families database

by Robert D. Finn, John Tate, Jaina Mistry, Penny C. Coggill, Stephen John Sammut, Hans-rudolf Hotz, Goran Ceric, Kristoffer Forslund, Sean R. Eddy, Erik L. L. Sonnhammer, Alex Bateman - Nucleic Acids Research, 2008, 36(Database issue): D281–D288
"... Pfam is a comprehensive collection of protein domains and families, represented as multiple sequence alignments and as profile hidden Markov models. The current release of Pfam (22.0) contains 9318 protein families. Pfam is now based not only on the UniProtKB sequence database, but also on NCBI GenP ..."
Abstract - Cited by 771 (13 self) - Add to MetaCart
Pfam is a comprehensive collection of protein domains and families, represented as multiple sequence alignments and as profile hidden Markov models. The current release of Pfam (22.0) contains 9318 protein families. Pfam is now based not only on the UniProtKB sequence database, but also on NCBI Gen

The SWISS-MODEL Workspace: A web-based environment for protein structure homology modelling

by Konstantin Arnold, Lorenza Bordoli, Torsten Schwede, et al. - BIOINFORMATICS , 2005
"... Motivation: Homology models of proteins are of great interest for planning and analyzing biological experiments when no experimental three-dimensional structures are available. Building homology models requires specialized programs and up-to-date sequence and structural databases. Integrating all re ..."
Abstract - Cited by 575 (5 self) - Add to MetaCart
required tools, programs and databases into a single web-based workspace facilitates access to homology modelling from a computer with web connection without the need of downloading and installing large program packages and databases. Results: SWISS-MODEL Workspace is a web-based integrated service

Access path selection in a relational database management system

by P. Griffiths Selinger, M. M. Astrahan, D. D. Chamberlin, It. A. Lorie, T. G. Price , 1979
"... ABSTRACT: In a high level query and data manipulation language such as SQL, requests are stated non-procedurally, without reference to access paths. This paper describes how System R chooses access paths for both simple (single relation) and complex queries (such as joins), given a user specificatio ..."
Abstract - Cited by 587 (1 self) - Add to MetaCart
ABSTRACT: In a high level query and data manipulation language such as SQL, requests are stated non-procedurally, without reference to access paths. This paper describes how System R chooses access paths for both simple (single relation) and complex queries (such as joins), given a user

Multidimensional Access Methods

by Volker Gaede, Oliver Günther , 1998
"... Search operations in databases require special support at the physical level. This is true for conventional databases as well as spatial databases, where typical search operations include the point query (find all objects that contain a given search point) and the region query (find all objects that ..."
Abstract - Cited by 686 (3 self) - Add to MetaCart
Search operations in databases require special support at the physical level. This is true for conventional databases as well as spatial databases, where typical search operations include the point query (find all objects that contain a given search point) and the region query (find all objects

Query evaluation techniques for large databases

by Goetz Graefe - ACM COMPUTING SURVEYS , 1993
"... Database management systems will continue to manage large data volumes. Thus, efficient algorithms for accessing and manipulating large sets and sequences will be required to provide acceptable performance. The advent of object-oriented and extensible database systems will not solve this problem. On ..."
Abstract - Cited by 767 (11 self) - Add to MetaCart
Database management systems will continue to manage large data volumes. Thus, efficient algorithms for accessing and manipulating large sets and sequences will be required to provide acceptable performance. The advent of object-oriented and extensible database systems will not solve this problem

Database resources of the National Center for Biotechnology Information

by David L. Wheeler, Tanya Barrett, Dennis A. Benson, Stephen H. Bryant, Kathi Canese, Vyacheslav Chetvernin, Deanna M. Church, Michael Dicuccio, Ron Edgar, Scott Federhen, Lewis Y. Geer, Yuri Kapustin, Oleg Khovayko, David L, David J. Lipman, Thomas L. Madden, Donna R. Maglott, James Ostell, Vadim Miller, Kim D. Pruitt, Gregory D. Schuler, Edwin Sequeira, Steven T. Sherry, Karl Sirotkin, Re Souvorov, Grigory Starchenko, Roman L. Tatusov, Tatiana A. Tatusova, Lukas Wagner, Eugene Yaschenko - Nucleic Acids Res , 2008
"... In addition to maintaining the GenBankÒ nucleic acid sequence database, the National Center for Biotechnology Information (NCBI) provides analysis and retrieval resources for the data in GenBank and other biological data made available through NCBI’s Web site. NCBI resources include Entrez, ..."
Abstract - Cited by 979 (15 self) - Add to MetaCart
In addition to maintaining the GenBankÒ nucleic acid sequence database, the National Center for Biotechnology Information (NCBI) provides analysis and retrieval resources for the data in GenBank and other biological data made available through NCBI’s Web site. NCBI resources include Entrez,

Fast subsequence matching in time-series databases

by Christos Faloutsos, M. Ranganathan, Yannis Manolopoulos - PROCEEDINGS OF THE 1994 ACM SIGMOD INTERNATIONAL CONFERENCE ON MANAGEMENT OF DATA , 1994
"... We present an efficient indexing method to locate 1-dimensional subsequences within a collection of sequences, such that the subsequences match a given (query) pattern within a specified tolerance. The idea is to map each data sequence into a small set of multidimensional rectangles in feature space ..."
Abstract - Cited by 533 (24 self) - Add to MetaCart
space. Then, these rectangles can be readily indexed using traditional spatial access methods, like the R*-tree [9]. In more detail, we use a sliding window over the data sequence and extract its features; the result is a trail in feature space. We propose an ecient and eective algorithm to divide
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