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Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei. Nucleic Acids Res

by John David Dignam, Russell M. Lebovitz, Robert G. Roeder , 1983
"... We have developed a procedure for preparing extracts from nuclei of human tissue culture cells that directs accurate transcription initiation in vitro from class II promoters. Conditions of extraction and assay have been optimized for maximum activity using the major late promoter of adenovirus 2. T ..."
Abstract - Cited by 1066 (11 self) - Add to MetaCart
We have developed a procedure for preparing extracts from nuclei of human tissue culture cells that directs accurate transcription initiation in vitro from class II promoters. Conditions of extraction and assay have been optimized for maximum activity using the major late promoter of adenovirus 2

The transcriptional program of sporulation in budding yeast

by S. Chu, J. DeRisi, M. Eisen, J. Mulholland, D. Botstein, P. O. Brown, I. Herskowitz - SCIENCE , 1998
"... Diploid cells of budding yeast produce haploid cells through the develop-mental program of sporulation, which consists of meiosis and spore morphogenesis. DNA microarrays containing nearly every yeast gene were used to assay changes in gene expression during sporulation. At least seven distinct temp ..."
Abstract - Cited by 497 (8 self) - Add to MetaCart
Diploid cells of budding yeast produce haploid cells through the develop-mental program of sporulation, which consists of meiosis and spore morphogenesis. DNA microarrays containing nearly every yeast gene were used to assay changes in gene expression during sporulation. At least seven distinct

Induction of pluripotent stem cells from adult human fibroblasts by defined factors

by Kazutoshi Takahashi, Koji Tanabe, Mari Ohnuki, Megumi Narita, Tomoko Ichisaka, Kiichiro Tomoda - Cell 2007
"... Successful reprogramming of differentiated human somatic cells into a pluripotent state would allow creation of patient- and disease-specific stem cells. We previously reported generation of induced pluripotent stem (iPS) cells, capable of germline transmission, from mouse somatic cells by transduct ..."
Abstract - Cited by 446 (3 self) - Add to MetaCart
by transduction of four defined transcription factors. Here, we demonstrate the generation of iPS cells from adult human dermal fibroblasts with the same four factors: Oct3/4, Sox2, Klf4, and c-Myc. Human iPS cells were similar to human embryonic stem (ES) cells in morphology, proliferation, surface antigens

A Glycosylated Liver-Specific Transcription Factor Stimulates Transcription of the Albumin Gene

by Serge Lichtsteiner, Ueli Schibler, Departement De Biologic Moleculaire, Universite De Geneve, Quai Ernest Ansermet
"... HNFl is a liver-specific transcription factor that plays the dominant role in determining the cell type-specific in vitro transcription of the albumin gene. Here we report the purification and preliminary characterization of HNFl. HNFl appears to be heavily glycosylated since it is retained on a whe ..."
Abstract - Cited by 19 (2 self) - Add to MetaCart
wheat germ agglutinin-agarose column and can be eluted from it with N-acetylglucosamine, a property not observed with other factors binding to the albumin promoter. Using in vitro transcription assays we demonstrate that purified HNFl strongly stimulates albumin promoter activity in spleen nuclear

Review Article In Vitro Reporter Assays for Screening of Chemicals That Disrupt Androgen Signaling

by Gargi Bagchi Bhattacharjee , S M Paul Khurana
"... Endocrine disruptive chemicals (EDCs) modulate hormone signaling and cause developmental and reproductive anomalies. Today, there is a global concern regarding endocrine disruption effects, particularly those mediated by the androgen receptor (AR). Androgen or male hormones are critical for the dev ..."
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to minimize deleterious effects produced by these toxic chemicals. As a first line of screening, in vitro transcription assays are very useful due to their speed, convenience, and cost effectiveness. In this paper, recent in vitro reporter assays for detecting androgenic or antiandrogenic activity of EDCs

Rho GTPases control polarity, protrusion, and adhesion during cell movement

by Catherine D. Nobes, Alan Hall - J. Cell , 1999
"... Abstract. Cell movement is essential during embryogenesis to establish tissue patterns and to drive morphogenetic pathways and in the adult for tissue repair and to direct cells to sites of infection. Animal cells move by crawling and the driving force is derived primarily from the coordinated assem ..."
Abstract - Cited by 200 (5 self) - Add to MetaCart
assembly and disassembly of actin filaments. The small GTPases, Rho, Rac, and Cdc42, regulate the organization of actin filaments and we have analyzed their contributions to the movement of primary embryo fibroblasts in an in vitro wound healing assay. Rac is essential for the protrusion of lamellipodia

RNA polymerase III transcribes human microRNAs.

by Glen M Borchert , William Lanier , Beverly L Davidson - Nature Struct. Mol. Biol. , 2006
"... Prior work demonstrates that mammalian microRNA (miRNA or miR) expression requires RNA polymerase II (Pol II). However, the transcriptional requirements of many miRNAs remain untested. Our genomic analysis of miRNAs in the human chromosome 19 miRNA cluster (C19MC) revealed that they are intersperse ..."
Abstract - Cited by 201 (3 self) - Add to MetaCart
-free transcription assays showed that Pol III, but not Pol II, is associated with miRNA genomic sequence and sufficient for transcription. Moreover, the mature miRNA sequences of approximately 50 additional human miRNAs lie within Alu and other known repetitive elements. These findings extend the current view of mi

DNA sequence requirements for transcriptional initiator activity in mammalian cells

by Ramin Javahery, Anita Khachi, Kiersten Lo, Beatrice Zenzie-gregory, Stephen, T. Smale - Mol. Cell Biol , 1994
"... A transcriptional initiator (Inr) for mammalian RNA polymerase II can be defined as a DNA sequence element that overlaps a transcription start site and is sufficient for (i) determining the start site location in a promoter that lacks a TATA box and (ii) enhancing the strength of a promoter that con ..."
Abstract - Cited by 74 (1 self) - Add to MetaCart
that contains a TATA box. We have prepared synthetic promoters containing random nucleotides downstream of Spl binding sites to determine the range of DNA sequences that convey Inr activity. Numerous sequences behaved as functional Inrs in an in vitro transcription assay, but the Inr activities varied

Materials and methods In vitro Run-Off Transcription Assay

by Anita Changela, Kui Chen, Yi Xue, Jackie Holschen, Caryn E. Outten, Thomas V, Alfonso Mondragón
"... Metal concentrations of an acetonitrile solution of [Cu(CH3CN)4]PF6 and aqueous solutions of AgNO3, K[Au(CN)2], ZnSO4•7H2O, and HgCl2 (all ACS grade reagents) were analyzed by ICP-AES. Purification of CueR and pUC19/copA was carried out as described previously (1). The copA transcription template wa ..."
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Metal concentrations of an acetonitrile solution of [Cu(CH3CN)4]PF6 and aqueous solutions of AgNO3, K[Au(CN)2], ZnSO4•7H2O, and HgCl2 (all ACS grade reagents) were analyzed by ICP-AES. Purification of CueR and pUC19/copA was carried out as described previously (1). The copA transcription template

Prediction of the coding sequences of unidentified human genes. VI. The coding sequences of 80 new genes (KIAA0201KIAA0280) deduced by analysis of cDNA clones from cell line KG-1 and brain

by Takahiro Nagase, Ken-ichi Ishikawa, Daisuke Nakajima, Miki Ohira, Naohiko Seki, Nobuyuki Mlyajlma, Ayako Tanaka, Hirokazu Kotani, Nobuo Nomura, Osamu Ohara - DNA Res , 1996
"... In this series of projects of sequencing human cDNA clones which correspond to relatively long transcripts, we newly determined the entire sequences of 100 cDNA clones which were screened on the basis of the potentiality of coding for large proteins in vitro. The cDNA libraries used were the fractio ..."
Abstract - Cited by 194 (15 self) - Add to MetaCart
In this series of projects of sequencing human cDNA clones which correspond to relatively long transcripts, we newly determined the entire sequences of 100 cDNA clones which were screened on the basis of the potentiality of coding for large proteins in vitro. The cDNA libraries used were
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