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Tandem repeats finder: a program to analyze DNA sequences

by Gary Benson , 1999
"... A tandem repeat in DNA is two or more contiguous, approximate copies of a pattern of nucleotides. Tandem repeats have been shown to cause human disease, may play a variety of regulatory and evolutionary roles and are important laboratory and analytic tools. Extensive knowledge about pattern size, co ..."
Abstract - Cited by 961 (9 self) - Add to MetaCart
A tandem repeat in DNA is two or more contiguous, approximate copies of a pattern of nucleotides. Tandem repeats have been shown to cause human disease, may play a variety of regulatory and evolutionary roles and are important laboratory and analytic tools. Extensive knowledge about pattern size

An Algorithm for Approximate Tandem Repeats

by Gad M. Landau, Jeanette P. Schmidt, Dina Sokol, Incyte Pharmaceuticals - In Proceedings of the 4th Annual Symposium on Combinatorial Pattern Matching (CPM), volume 684 of Lecture Notes in Computer Science , 1993
"... A perfect single tandem repeat is defined as a nonempty string that can be divided into two identical substrings, e.g. abcabc. An approximate single tandem repeat is one in which the substrings are similar, but not identical, e.g. abcdaacd. ..."
Abstract - Cited by 88 (3 self) - Add to MetaCart
A perfect single tandem repeat is defined as a nonempty string that can be divided into two identical substrings, e.g. abcabc. An approximate single tandem repeat is one in which the substrings are similar, but not identical, e.g. abcdaacd.

tandem repeats

by Ro Cabezas Cruz, Erich Zweygarth, Mucio Flavio, Barbosa Ribeiro, Julia Angelica, Gonçalves Silveira, Jose De La Fuente, Libor Grubhoffer, James J Valdés, Lygia Maria, Friche Passos
"... New species of Ehrlichia isolated from Rhipicephalus (Boophilus) microplus shows an ajor immunogenic E. chaffeensis and the related mucin-like protein in E. ruminantium. Conclusions: Based on the molecular and phylogenetic analysis of the 16S rRNA, groEL, dsb and gltA genes we Cruz et al. Parasites ..."
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New species of Ehrlichia isolated from Rhipicephalus (Boophilus) microplus shows an ajor immunogenic E. chaffeensis and the related mucin-like protein in E. ruminantium. Conclusions: Based on the molecular and phylogenetic analysis of the 16S rRNA, groEL, dsb and gltA genes we Cruz et al. Parasites & Vectors 2012, 5:291

TRDB -- The Tandem Repeats Database

by Yevgeniy Gelfand, Alfredo Rodriguez, Gary Benson - NUCLEIC ACIDS RESEARCH ADVANCE ACCESS PUBLISHED DECEMBER 14, 2006 , 2006
"... Tandem repeats in DNA have been under intensive study for many years, first, as a consequence of their usefulness as genomic markers and DNA fingerprints and more recently as their role in human disease and regulatory processes has become apparent. The Tandem Repeats Database (TRDB) is a public repo ..."
Abstract - Cited by 5 (0 self) - Add to MetaCart
Tandem repeats in DNA have been under intensive study for many years, first, as a consequence of their usefulness as genomic markers and DNA fingerprints and more recently as their role in human disease and regulatory processes has become apparent. The Tandem Repeats Database (TRDB) is a public

RESEARCH Tandem Repeat Analysis for

by Surveillance Of Human Salmonella
"... surveillance system of human enteric infections, all Salmonella enterica serotype Typhimurium isolates are currently subtyped by using phage typing, antimicrobial resistance profiles, and pulsed-field gel electrophoresis (PFGE). We evaluated the value of real-time typing that uses multiple-locus var ..."
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-locus variable-number tandem-repeats analysis (MLVA) of S. Typhimurium to detect possible outbreaks. Because only a few subtypes identified by PFGE and phage typing account for most infections, we included MLVA typing in the routine surveillance in a 2-year period beginning December 2003. The 1,019 typed

Filtering Tandem Repeats in DNA Sequences

by Dina Sokol, Justin Tojeira
"... A tandem repeat is a sequence of two or more contiguous, approximate copies of a pattern. Tandem repeats occur in the genomes of both eukaryotic and prokaryotic organisms. They are important in numerous fields including disease diagnosis, mapping studies, human identity testing (DNA fingerprinting), ..."
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A tandem repeat is a sequence of two or more contiguous, approximate copies of a pattern. Tandem repeats occur in the genomes of both eukaryotic and prokaryotic organisms. They are important in numerous fields including disease diagnosis, mapping studies, human identity testing (DNA fingerprinting

Mutation of human short tandem repeats

by James L. Weber, Carmen Wong - 996) Genetic Data Analysis II. Sinauer , 1993
"... A total of 20,000 parent-offspring transfers of alleles were examined through the genotyping within 40 CEPH reference families of 28 short tandem repeat polymorphisms (STRPs) located on chromosome 19. Forty-seven initial mutation events were detected in the STRPs using DNA from transformed lymphobla ..."
Abstract - Cited by 94 (1 self) - Add to MetaCart
A total of 20,000 parent-offspring transfers of alleles were examined through the genotyping within 40 CEPH reference families of 28 short tandem repeat polymorphisms (STRPs) located on chromosome 19. Forty-seven initial mutation events were detected in the STRPs using DNA from transformed

tandem repeats and a

by Glendon D. Mclachlan, Joseph Slocik, Robert Mantz, David Kaplan, Sean Cahill, Mark Girvin, Steve Greenbaum
"... High-resolution NMR characterization of a spider-silk mimetic composed of 15 ..."
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High-resolution NMR characterization of a spider-silk mimetic composed of 15

Recombination Tandem repeat Secondary

by Mol Biol Rep, Min Shi, Æ Xue-xin Chen, S. Wei, P. Tang, L. Zheng, M. Shi, X. Chen
"... The complete mitochondrial genome of Evania appendigaster (Hymenoptera: Evaniidae) has low A+T content and a long intergenic spacer between atp8 and atp6 ..."
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The complete mitochondrial genome of Evania appendigaster (Hymenoptera: Evaniidae) has low A+T content and a long intergenic spacer between atp8 and atp6

Expansion of tandem repeats and oligomer

by Sergey V. Buldyrev A, Nikolay V. Dokholyan A, Shlomo Havlin B, H. Eugene Stanley A , 1999
"... www.elsevier.com/locate/physa ..."
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www.elsevier.com/locate/physa
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