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40,373
ModelBased Analysis of Oligonucleotide Arrays: Model Validation, Design Issues and Standard Error Application
, 2001
"... Background: A modelbased analysis of oligonucleotide expression arrays we developed previously uses a probesensitivity index to capture the response characteristic of a specific probe pair and calculates modelbased expression indexes (MBEI). MBEI has standard error attached to it as a measure of ..."
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Cited by 775 (28 self)
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reduces the variability of low expression estimates, and provides a natural method of calculating expression values for PMonly arrays. The standard errors attached to expression values can be used to assess the reliability of downstream analysis. Published: X Month 2001 Genome Biology...
Bayesian Model Selection in Social Research (with Discussion by Andrew Gelman & Donald B. Rubin, and Robert M. Hauser, and a Rejoinder)
 SOCIOLOGICAL METHODOLOGY 1995, EDITED BY PETER V. MARSDEN, CAMBRIDGE,; MASS.: BLACKWELLS.
, 1995
"... It is argued that Pvalues and the tests based upon them give unsatisfactory results, especially in large samples. It is shown that, in regression, when there are many candidate independent variables, standard variable selection procedures can give very misleading results. Also, by selecting a singl ..."
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Cited by 585 (21 self)
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It is argued that Pvalues and the tests based upon them give unsatisfactory results, especially in large samples. It is shown that, in regression, when there are many candidate independent variables, standard variable selection procedures can give very misleading results. Also, by selecting a
Symbolic Model Checking for Realtime Systems
 INFORMATION AND COMPUTATION
, 1992
"... We describe finitestate programs over realnumbered time in a guardedcommand language with realvalued clocks or, equivalently, as finite automata with realvalued clocks. Model checking answers the question which states of a realtime program satisfy a branchingtime specification (given in an ..."
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Cited by 578 (50 self)
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We describe finitestate programs over realnumbered time in a guardedcommand language with realvalued clocks or, equivalently, as finite automata with realvalued clocks. Model checking answers the question which states of a realtime program satisfy a branchingtime specification (given
Representing Moving Images with Layers
, 1994
"... We describe a system for representing moving images with sets of overlapping layers. Each layer contains an intensity map that defines the additive values of each pixel, along with an alpha map that serves as a mask indicating the transparency. The layers are ordered in depth and they occlude each o ..."
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Cited by 542 (11 self)
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We describe a system for representing moving images with sets of overlapping layers. Each layer contains an intensity map that defines the additive values of each pixel, along with an alpha map that serves as a mask indicating the transparency. The layers are ordered in depth and they occlude each
High dimensional graphs and variable selection with the Lasso
 ANNALS OF STATISTICS
, 2006
"... The pattern of zero entries in the inverse covariance matrix of a multivariate normal distribution corresponds to conditional independence restrictions between variables. Covariance selection aims at estimating those structural zeros from data. We show that neighborhood selection with the Lasso is a ..."
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Cited by 736 (22 self)
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is a computationally attractive alternative to standard covariance selection for sparse highdimensional graphs. Neighborhood selection estimates the conditional independence restrictions separately for each node in the graph and is hence equivalent to variable selection for Gaussian linear models. We
Determinants of Economic Growth: A CrossCountry Empirical Study
, 1996
"... Empirical findings for a panel of around 100 countries from 1960 to 1990 strongly support the general notion of conditional convergence. For a given starting level of real per capita GDP, the growth rate is enhanced by higher initial schooling and life expectancy, lower fertility, lower government c ..."
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Cited by 892 (12 self)
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consumption, better maintenance of the rule of law, lower inflation, and improvements in the terms of trade. For given values of these and other variables, growth is negatively related to the initial level of real per capita GDP. Political freedom has only a weak effect on growth but there is some indication
Probabilistic Latent Semantic Analysis
 In Proc. of Uncertainty in Artificial Intelligence, UAI’99
, 1999
"... Probabilistic Latent Semantic Analysis is a novel statistical technique for the analysis of twomode and cooccurrence data, which has applications in information retrieval and filtering, natural language processing, machine learning from text, and in related areas. Compared to standard Latent Sema ..."
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Cited by 771 (9 self)
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Probabilistic Latent Semantic Analysis is a novel statistical technique for the analysis of twomode and cooccurrence data, which has applications in information retrieval and filtering, natural language processing, machine learning from text, and in related areas. Compared to standard Latent
Probabilistic Latent Semantic Indexing
, 1999
"... Probabilistic Latent Semantic Indexing is a novel approach to automated document indexing which is based on a statistical latent class model for factor analysis of count data. Fitted from a training corpus of text documents by a generalization of the Expectation Maximization algorithm, the utilized ..."
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Cited by 1225 (10 self)
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model is able to deal with domainspecific synonymy as well as with polysemous words. In contrast to standard Latent Semantic Indexing (LSI) by Singular Value Decomposition, the probabilistic variant has a solid statistical foundation and defines a proper generative data model. Retrieval experiments
Domain names  Implementation and Specification
 RFC883, USC/Information Sciences Institute
, 1983
"... This RFC describes the details of the domain system and protocol, and assumes that the reader is familiar with the concepts discussed in a companion RFC, "Domain Names Concepts and Facilities " [RFC1034]. The domain system is a mixture of functions and data types which are an official pr ..."
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Cited by 725 (9 self)
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protocol and functions and data types which are still experimental. Since the domain system is intentionally extensible, new data types and experimental behavior should always be expected in parts of the system beyond the official protocol. The official protocol parts include standard queries, responses
MAFFT version 5: improvement in accuracy of multiple sequence alignment
 NUCLEIC ACIDS RES
, 2005
"... The accuracy of multiple sequence alignment program MAFFT has been improved. The new version (5.3) of MAFFT offers new iterative refinement options, HINSi, FINSi and GINSi, in which pairwise alignment information are incorporated into objective function. These new options of MAFFT showed high ..."
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Cited by 801 (5 self)
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higher accuracy than currently available methods including TCoffee version 2 and CLUSTAL W in benchmark tests consisting of alignments of.50 sequences. Like the previously available options, the new options of MAFFT can handle hundreds of sequences on a standard desktop computer. We also examined
Results 1  10
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40,373