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Biplots of compositional data

by John Aitchison, Michael Greenacre - Applied Statistics , 2002
"... The singular value decomposition and its interpretation as a linear biplot has proved to be a powerful tool for analysing many forms of multivariate data. Here we adapt biplot methodology to the speci¯c case of compositional data consisting of positive vectors each of which is constrained to have un ..."
Abstract - Cited by 44 (13 self) - Add to MetaCart
The singular value decomposition and its interpretation as a linear biplot has proved to be a powerful tool for analysing many forms of multivariate data. Here we adapt biplot methodology to the speci¯c case of compositional data consisting of positive vectors each of which is constrained to have

Ecologically Meaningful Transformations For Ordination Of Species Data

by Pierre Legendre, Eugene D. Gallagher
"... This paper examines how to obtain species biplots in unconstrained or constrained ordination without resorting to the Euclidean distance (used in principal component analysis, PCA, and redundancy analysis, RDA) or the chi-square distance (preserved in correspondence analysis, CA, and canonical corre ..."
Abstract - Cited by 208 (8 self) - Add to MetaCart
This paper examines how to obtain species biplots in unconstrained or constrained ordination without resorting to the Euclidean distance (used in principal component analysis, PCA, and redundancy analysis, RDA) or the chi-square distance (preserved in correspondence analysis, CA, and canonical

EP (2002). “Biplot and Singular Value Decomposition Macros for Excel c

by Ilya Lipkovich, Eric P. Smith - Journal of Statistical Software
"... The biplot display is a graph of row and column markers obtained from data that forms a two-way table. The markers are calculated from the singular value decomposition of the data matrix. The biplot display may be used with many multivariate methods to display relationships between variables and obj ..."
Abstract - Cited by 7 (0 self) - Add to MetaCart
and objects. It is commonly used in ecological applications to plot relationships between species and sites. This paper describes a set of Excel macros that may be used to draw a biplot display based on results from principal components analysis, correspondence analysis, canonical discriminant analysis

GGE Biplot Analysis of Oil Yield in Lemongrass (Cymbopogon spp.)

by M K Bhan , S Pal , B L Rao , A K Dhar , M S Kang
"... ABSTRACT. Six varieties/strains belonging to three species of Cymbopogon, viz., C. flexuosus, C. khasianus and C. pendulus, or their hybrids, were evaluated for oil yield across four years (1997-98-2000-01) as very limited information is available on variety-by-environment interaction from multi-e ..."
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ABSTRACT. Six varieties/strains belonging to three species of Cymbopogon, viz., C. flexuosus, C. khasianus and C. pendulus, or their hybrids, were evaluated for oil yield across four years (1997-98-2000-01) as very limited information is available on variety-by-environment interaction from multi

DOI 10.1007/s004420100716

by unknown authors
"... Abstract This paper examines how to obtain species biplots in unconstrained or constrained ordination without resorting to the Euclidean distance [used in principalcomponent analysis (PCA) and redundancy analysis (RDA)] or the chi-square distance [preserved in correspondence analysis (CA) and canoni ..."
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Abstract This paper examines how to obtain species biplots in unconstrained or constrained ordination without resorting to the Euclidean distance [used in principalcomponent analysis (PCA) and redundancy analysis (RDA)] or the chi-square distance [preserved in correspondence analysis (CA

Canonical community ordination. Part I: Basic theory and linear methods. Ecoscience

by Cajo J. F. Ter Braak - Ecoscience , 1994
"... 1 Canonical community ordination comprises a collection of methods that relate species assemblages to their environment, in both observational studies and designed experiments. Canonical ordination differs from ordination sensu stricto in that species and environment data are analyzed simultaneously ..."
Abstract - Cited by 47 (1 self) - Add to MetaCart
analysis, biplot, ordination diagram, species-environment relations. 2

Assessment of Total Phenolic, Antioxidant, and Antibacterial Activities of Passiflora Species

by Shiamala Devi Ramaiya , Japar Sidik Bujang , Muta Harah Zakaria , Geng , A A Guevara-Garcia
"... This study focused on total phenolic content (TPC) and antioxidant and antibacterial activities of the leaves and stems of Passiflora quadrangularis, P. maliformis, and P. edulis extracted using three solvents: petroleum ether, acetone, and methanol. The maximum extraction yields of antioxidant com ..."
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was observed for the methanol extract of P. maliformis against B. subtilis. Generally, extracts from the Passiflora species exhibit distinct inhibition against Gram-positive but not Gram-negative bacteria. Based on the generated biplot, three clusters of bacteria were designated according to their performance

Wild safflower species (Carthamus oxyacanthus Bieb.): a possible source of drought tolerance for arid environments.

by Mohammad Mahdi Majidi , Vahid Tavakoli , Aghafakhr Mirlohi , Mohammad Reza Sabzalian - Aust. J. Crop Sci. , 2011
"... Abstract The detection and incorporation of genes from wild plant species provides a means for sustaining genetic improvement in plants cultivated in arid environments. This research measured relative levels of drought tolerance in several genotypes of cultivated (Carthamus tinctorius) and wild (Ca ..."
Abstract - Cited by 5 (2 self) - Add to MetaCart
Abstract The detection and incorporation of genes from wild plant species provides a means for sustaining genetic improvement in plants cultivated in arid environments. This research measured relative levels of drought tolerance in several genotypes of cultivated (Carthamus tinctorius) and wild

Research Article Genetic Diversity in Passiflora Species Assessed by Morphological and ITS Sequence Analysis

by Shiamala Devi Ramaiya, Japar Sidik Bujang, Muta Harah Zakaria
"... Copyright © 2014 Shiamala Devi Ramaiya et al.This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. This study usedmorphological characteriz ..."
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variables was used to classify the Passiflora species. The biplots generated five distinct groups discriminated by morphological variables. The group consisted of cultivars of P. edulis with high levels of genetic similarity; in contrast, P. foetida was highly divergent from other species

Research Article Assessment of Total Phenolic, Antioxidant, and Antibacterial Activities of Passiflora Species

by Shiamala Devi Ramaiya, Japar Sidik Bujang, Muta Harah Zakaria
"... Copyright © 2014 Shiamala Devi Ramaiya et al.This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. This study focused on total phenolic con ..."
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. maliformis against B. subtilis. Generally, extracts from the Passiflora species exhibit distinct inhibition against Gram-positive but not Gram-negative bacteria. Based on the generated biplot, three clusters of bacteria were designated according to their performance towards the tested extracts. The present
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