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39,673
Ptolemy: A Framework for Simulating and Prototyping Heterogeneous Systems
, 1992
"... Ptolemy is an environment for simulation and prototyping of heterogeneous systems. It uses modern object-oriented software technology (C++) to model each subsystem in a natural and efficient manner, and to integrate these subsystems into a whole. Ptolemy encompasses practically all aspects of design ..."
Abstract
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Cited by 571 (89 self)
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Ptolemy is an environment for simulation and prototyping of heterogeneous systems. It uses modern object-oriented software technology (C++) to model each subsystem in a natural and efficient manner, and to integrate these subsystems into a whole. Ptolemy encompasses practically all aspects
Income and Wealth Heterogeneity in the Macroeconomy,
- Journal of Political Economy
, 1998
"... How do movements in the distribution of income and wealth affect the macroeconomy? We analyze this question using a calibrated version of the stochastic growth model with partially uninsurable idiosyncratic risk and movements in aggregate productivity. Our main finding is that, in the stationary st ..."
Abstract
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Cited by 678 (11 self)
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stochastic equilibrium, the behavior of the macroeconomic aggregates can be almost perfectly described using only the mean of the wealth distribution. This result is robust to substantial changes in both parameter values and model specification. Our benchmark model, whose only difference from
What is a hidden Markov model?
, 2004
"... Often, problems in biological sequence analysis are just a matter of putting the right label on each residue. In gene identification, we want to label nucleotides as exons, introns, or intergenic sequence. In sequence alignment, we want to associate residues in a query sequence with ho-mologous resi ..."
Abstract
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Cited by 1344 (8 self)
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-mologous residues in a target database sequence. We can always write an ad hoc program for any given problem, but the same potentially frustrating issues will always recur. One issue is that we often want to incorporate multiple heterogenous sources of information. A genefinder, for in-stance, ought to combine
Face Recognition Based on Fitting a 3D Morphable Model
- IEEE TRANS. PATTERN ANAL. MACH. INTELL
, 2003
"... This paper presents a method for face recognition across variations in pose, ranging from frontal to profile views, and across a wide range of illuminations, including cast shadows and specular reflections. To account for these variations, the algorithm simulates the process of image formation in 3D ..."
Abstract
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Cited by 551 (19 self)
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model, an algorithm to fit the model to images, and a framework for face identification. In this framework, faces are represented by model parameters for 3D shape and texture. We present results obtained with 4,488 images from the publicly available CMU-PIE database and 1,940 images from the FERET
Hierarchical mixtures of experts and the EM algorithm
, 1993
"... We present a tree-structured architecture for supervised learning. The statistical model underlying the architecture is a hierarchical mixture model in which both the mixture coefficients and the mixture components are generalized linear models (GLIM’s). Learning is treated as a max-imum likelihood ..."
Abstract
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Cited by 885 (21 self)
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problem; in particular, we present an Expectation-Maximization (EM) algorithm for adjusting the parame-ters of the architecture. We also develop an on-line learning algorithm in which the pa-rameters are updated incrementally. Comparative simulation results are presented in the robot dynamics domain.
The Ant System: Optimization by a colony of cooperating agents
- IEEE TRANSACTIONS ON SYSTEMS, MAN, AND CYBERNETICS-PART B
, 1996
"... An analogy with the way ant colonies function has suggested the definition of a new computational paradigm, which we call Ant System. We propose it as a viable new approach to stochastic combinatorial optimization. The main characteristics of this model are positive feedback, distributed computation ..."
Abstract
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Cited by 1300 (46 self)
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methodology to the classical Traveling Salesman Problem (TSP), and report simulation results. We also discuss parameter selection and the early setups of the model, and compare it with tabu search and simulated annealing using TSP. To demonstrate the robustness of the approach, we show how the Ant System (AS
Variable Selection via Nonconcave Penalized Likelihood and its Oracle Properties
, 2001
"... Variable selection is fundamental to high-dimensional statistical modeling, including nonparametric regression. Many approaches in use are stepwise selection procedures, which can be computationally expensive and ignore stochastic errors in the variable selection process. In this article, penalized ..."
Abstract
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Cited by 948 (62 self)
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of the proposed penalized likelihood estimators are established. Furthermore, with proper choice of regularization parameters, we show that the proposed estimators perform as well as the oracle procedure in variable selection; namely, they work as well as if the correct submodel were known. Our simulation shows
Paml 4: Phylogenetic analysis by maximum likelihood
- Mol. Biol. Evol
, 2007
"... PAML, currently in version 4, is a package of programs for phylogenetic analyses of DNA and protein sequences using maximum likelihood (ML). The programs may be used to compare and test phylogenetic trees, but their main strengths lie in the rich repertoire of evolutionary models implemented, which ..."
Abstract
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Cited by 1201 (28 self)
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can be used to estimate parameters in models of sequence evolution and to test interesting biological hypotheses. Uses of the programs include estimation of synonymous and nonsynonymous rates (dN and dS) between two protein-coding DNA sequences, inference of positive Darwinian selection through
A Reliable Multicast Framework for Light-weight Sessions and Application Level Framing
, 1995
"... This paper... reliable multicast framework for application level framing and light-weight sessions. The algorithms of this framework are efficient, robust, and scale well to both very large networks and very large sessions. The framework has been prototype in wb, a distributed whiteboard application ..."
Abstract
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Cited by 1085 (45 self)
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, and the application level framing protocol model. As with unicast communications, the performance of a reliable multicast delivery algorithm depends on the underlying topology and operational environment. We investigate that dependence via analysis and simulation, and demonstrate an adaptive algorithm that uses
MEGA5: Molecular evolutionary genetics analysis using maximum . . .
, 2011
"... Comparative analysis of molecular sequence data is essential for reconstructing the evolutionary histories of species and inferring the nature and extent of selective forces shaping the evolution of genes and species. Here, we announce the release of Molecular Evolutionary Genetics Analysis version ..."
Abstract
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Cited by 7284 (25 self)
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) analyses for inferring evolutionary trees, selecting best-fit substitution models (nucleotide or amino acid), inferring ancestral states and sequences (along with probabilities), and estimating evolutionary rates site-by-site. In computer simulation analyses, ML tree inference algorithms in MEGA5 compared
Results 1 - 10
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39,673
