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A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood
, 2003
"... The increase in the number of large data sets and the complexity of current probabilistic sequence evolution models necessitates fast and reliable phylogeny reconstruction methods. We describe a new approach, based on the maximumlikelihood principle, which clearly satisfies these requirements. The ..."
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Cited by 2176 (27 self)
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. The core of this method is a simple hillclimbing algorithm that adjusts tree topology and branch lengths simultaneously. This algorithm starts from an initial tree built by a fast distancebased method and modifies this tree to improve its likelihood at each iteration. Due to this simultaneous adjustment
N: Metaanalysis in clinical trials
 Controlled Clinical Trials
, 1986
"... ABSTRACT: This paper examines eight published reviews each reporting results from several related trials. Each review pools the results from the relevant trials in order to evaluate the efficacy of a certain treatment for a specified medical condition. These reviews lack consistent assessment of hom ..."
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Cited by 1299 (0 self)
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relevant covariates which would reduce the heterogeneity and allow for more specific therapeutic recommendations. We suggest a simple noniterative procedure for characterizing the distribution of treatment effects in a series of studies. KEY WORDS: random effects model, heterogeneity of treatment effects
The CN2 Induction Algorithm
 MACHINE LEARNING
, 1989
"... Systems for inducing concept descriptions from examples are valuable tools for assisting in the task of knowledge acquisition for expert systems. This paper presents a description and empirical evaluation of a new induction system, cn2, designed for the efficient induction of simple, comprehensib ..."
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Cited by 890 (6 self)
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Systems for inducing concept descriptions from examples are valuable tools for assisting in the task of knowledge acquisition for expert systems. This paper presents a description and empirical evaluation of a new induction system, cn2, designed for the efficient induction of simple
A Limited Memory Algorithm for Bound Constrained Optimization
 SIAM JOURNAL ON SCIENTIFIC COMPUTING
, 1994
"... An algorithm for solving large nonlinear optimization problems with simple bounds is described. It is based ..."
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Cited by 572 (9 self)
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An algorithm for solving large nonlinear optimization problems with simple bounds is described. It is based
The weighted majority algorithm
, 1992
"... We study the construction of prediction algorithms in a situation in which a learner faces a sequence of trials, with a prediction to be made in each, and the goal of the learner is to make few mistakes. We are interested in the case that the learner has reason to believe that one of some pool of kn ..."
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Cited by 876 (42 self)
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of known algorithms will perform well, but the learner does not know which one. A simple and effective method, based on weighted voting, is introduced for constructing a compound algorithm in such a circumstance. We call this method the Weighted Majority Algorithm. We show that this algorithm is robust
On Spectral Clustering: Analysis and an algorithm
 ADVANCES IN NEURAL INFORMATION PROCESSING SYSTEMS
, 2001
"... Despite many empirical successes of spectral clustering methods  algorithms that cluster points using eigenvectors of matrices derived from the distances between the points  there are several unresolved issues. First, there is a wide variety of algorithms that use the eigenvectors in slightly ..."
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Cited by 1712 (13 self)
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in slightly different ways. Second, many of these algorithms have no proof that they will actually compute a reasonable clustering. In this paper, we present a simple spectral clustering algorithm that can be implemented using a few lines of Matlab. Using tools from matrix perturbation theory, we analyze
Optimal Aggregation Algorithms for Middleware
 IN PODS
, 2001
"... Assume that each object in a database has m grades, or scores, one for each of m attributes. For example, an object can have a color grade, that tells how red it is, and a shape grade, that tells how round it is. For each attribute, there is a sorted list, which lists each object and its grade under ..."
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Cited by 714 (4 self)
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simple algorithm (“the threshold algorithm”, or TA) that is optimal in a much stronger sense than FA. We show that TA is essentially optimal, not just for some monotone aggregation functions, but for all of them, and not just in a highprobability worstcase sense, but over every database. Unlike FA
A learning algorithm for Boltzmann machines
 Cognitive Science
, 1985
"... The computotionol power of massively parallel networks of simple processing elements resides in the communication bandwidth provided by the hardware connections between elements. These connections con allow a significant fraction of the knowledge of the system to be applied to an instance of a probl ..."
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Cited by 582 (13 self)
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to a general learning rule for modifying the connection strengths so as to incorporate knowledge obout o task domain in on efficient way. We describe some simple examples in which the learning algorithm creates internal representations thot ore demonstrobly the most efficient way of using
Factor Graphs and the SumProduct Algorithm
 IEEE TRANSACTIONS ON INFORMATION THEORY
, 1998
"... A factor graph is a bipartite graph that expresses how a "global" function of many variables factors into a product of "local" functions. Factor graphs subsume many other graphical models including Bayesian networks, Markov random fields, and Tanner graphs. Following one simple c ..."
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Cited by 1786 (70 self)
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A factor graph is a bipartite graph that expresses how a "global" function of many variables factors into a product of "local" functions. Factor graphs subsume many other graphical models including Bayesian networks, Markov random fields, and Tanner graphs. Following one simple
A simple distributed autonomous power control algorithm and its convergence
 IEEE TRANSACTIONS ON VEHICULAR TECHNOLOGY
, 1993
"... For wireless cellular communication systems, one seeks a simple effective means of power control of signals associated with randomly dispersed users that are reusing a single channel in different cells. By effecting the lowest interference environment, in meeting a required minimum signaltointerf ..."
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Cited by 474 (3 self)
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For wireless cellular communication systems, one seeks a simple effective means of power control of signals associated with randomly dispersed users that are reusing a single channel in different cells. By effecting the lowest interference environment, in meeting a required minimum signal
Results 1  10
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