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Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

by Wolfgang Kabsch, Christian Sander , 1983
"... For a successful analysis of the relation between amino acid sequence and protein structure, an unambiguous and physically meaningful definition of secondary structure is essential. We have developed a set of simple and physically motivated criteria for secondary structure, programmed as a pattern-r ..."
Abstract - Cited by 2096 (5 self) - Add to MetaCart
-recognition process of hydrogen-bonded and geometrical features extracted from x-ray coordinates. Cooperative secondary structure is recognized as repeats of the elementary hydrogen-bonding patterns “turn ” and “bridge. ” Repeating turns are “helices, ” repeating bridges are “ladders, ” connected ladders are “sheets

CATH -- a hierarchic classification of protein domain structures

by C A Orengo, A D Michie, S Jones, D T Jones, M B Swindells, J M Thornton - STRUCTURE , 1997
"... Background: Protein evolution gives rise to families of structurally related proteins, within which sequence identities can be extremely low. As a result, structure-based classifications can be effective at identifying unanticipated relationships in known structures and in optimal cases function can ..."
Abstract - Cited by 470 (33 self) - Add to MetaCart
can also be assigned. The ever increasing number of known protein structures is too large to classify all proteins manually, therefore, automatic methods are needed for fast evaluation of protein structures. Results: We present a semi-automatic procedure for deriving a novel hierarchical

DBpedia: A Nucleus for a Web of Open Data

by Sören Auer, Christian Bizer, Georgi Kobilarov, Jens Lehmann, Zachary Ives, et al. - PROC. 6TH INT’L SEMANTIC WEB CONF , 2007
"... DBpedia is a community effort to extract structured information from Wikipedia and to make this information available on the Web. DBpedia allows you to ask sophisticated queries against datasets derived from Wikipedia and to link other datasets on the Web to Wikipedia data. We describe the extractio ..."
Abstract - Cited by 651 (37 self) - Add to MetaCart
DBpedia is a community effort to extract structured information from Wikipedia and to make this information available on the Web. DBpedia allows you to ask sophisticated queries against datasets derived from Wikipedia and to link other datasets on the Web to Wikipedia data. We describe

The TSIMMIS Project: Integration of Heterogeneous Information Sources

by Sudarshan Chawathe, Hector Garcia-Molina, Joachim Hammer, Kelly Ireland, Yannis Papakonstantinou, Jeffrey Ullman, Jennifer Widom
"... The goal of the Tsimmis Project is to develop tools that facilitate the rapid integration of heterogeneous information sources that may include both structured and unstructured data. This paper gives an overview of the project, describing components that extract properties from unstructured objects, ..."
Abstract - Cited by 535 (19 self) - Add to MetaCart
The goal of the Tsimmis Project is to develop tools that facilitate the rapid integration of heterogeneous information sources that may include both structured and unstructured data. This paper gives an overview of the project, describing components that extract properties from unstructured objects

Semi-automatic Wrapper Generation for Internet Information Sources

by Naveen Ashish, Craig Knoblock - In Conference on Cooperative Information Systems , 1997
"... To simplify the task of obtaining information from the vast number of information sources that are available on the World Wide Web (WWW), we are building tools to build information mediators for extracting and integrating data from multiple Web sources. In a mediator based approach, wrappers are bui ..."
Abstract - Cited by 131 (5 self) - Add to MetaCart
are built around individual information sources, that provide translation between the mediator query language and the individual source. We present an approach for semi-automatically generating wrappers for structured internet sources. The key idea is to exploit formatting information in Web pages from

Authoritative Sources in a Hyperlinked Environment

by Jon M. Kleinberg - JOURNAL OF THE ACM , 1999
"... The network structure of a hyperlinked environment can be a rich source of information about the content of the environment, provided we have effective means for understanding it. We develop a set of algorithmic tools for extracting information from the link structures of such environments, and repo ..."
Abstract - Cited by 3632 (12 self) - Add to MetaCart
The network structure of a hyperlinked environment can be a rich source of information about the content of the environment, provided we have effective means for understanding it. We develop a set of algorithmic tools for extracting information from the link structures of such environments

Matching pursuits with time-frequency dictionaries

by Stephane G. Mallat, Zhifeng Zhang - IEEE Transactions on Signal Processing , 1993
"... Abstract-We introduce an algorithm, called matching pursuit, that decomposes any signal into a linear expansion of waveforms that are selected from a redundant dictionary of functions. These waveforms are chosen in order to best match the signal structures. Matching pursuits are general procedures t ..."
Abstract - Cited by 1671 (13 self) - Add to MetaCart
matching pursuit isolates the signal structures that are coherent with respect to a given dictionary. An application to pattern extraction from noisy signals is described. We compare a matching pursuit decomposition with a signal expansion over an optimized wavepacket orthonormal basis, selected

Actions as space-time shapes

by Lena Gorelick, Moshe Blank, Eli Shechtman, Michal Irani, Ronen Basri - IN ICCV , 2005
"... Human action in video sequences can be seen as silhouettes of a moving torso and protruding limbs undergoing articulated motion. We regard human actions as three-dimensional shapes induced by the silhouettes in the space-time volume. We adopt a recent approach [14] for analyzing 2D shapes and genera ..."
Abstract - Cited by 651 (4 self) - Add to MetaCart
and generalize it to deal with volumetric space-time action shapes. Our method utilizes properties of the solution to the Poisson equation to extract space-time features such as local space-time saliency, action dynamics, shape structure and orientation. We show that these features are useful for action

Multiscalar Processors

by Gurindar S. Sohi, Scott E. Breach, T. N. Vijaykumar - In Proceedings of the 22nd Annual International Symposium on Computer Architecture , 1995
"... Multiscalar processors use a new, aggressive implementation paradigm for extracting large quantities of instruction level parallelism from ordinary high level language programs. A single program is divided into a collection of tasks by a combination of software and hardware. The tasks are distribute ..."
Abstract - Cited by 589 (30 self) - Add to MetaCart
Multiscalar processors use a new, aggressive implementation paradigm for extracting large quantities of instruction level parallelism from ordinary high level language programs. A single program is divided into a collection of tasks by a combination of software and hardware. The tasks

Building a Large Annotated Corpus of English: The Penn Treebank

by Mitchell P. Marcus, Beatrice Santorini, Mary Ann Marcinkiewicz - COMPUTATIONAL LINGUISTICS , 1993
"... There is a growing consensus that significant, rapid progress can be made in both text understanding and spoken language understanding by investigating those phenomena that occur most centrally in naturally occurring unconstrained materials and by attempting to automatically extract information abou ..."
Abstract - Cited by 2740 (10 self) - Add to MetaCart
There is a growing consensus that significant, rapid progress can be made in both text understanding and spoken language understanding by investigating those phenomena that occur most centrally in naturally occurring unconstrained materials and by attempting to automatically extract information
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