• Documents
  • Authors
  • Tables
  • Log in
  • Sign up
  • MetaCart
  • DMCA
  • Donate

CiteSeerX logo

Advanced Search Include Citations

Tools

Sorted by:
Try your query at:
Semantic Scholar Scholar Academic
Google Bing DBLP
Results 1 - 10 of 14,547
Next 10 →

The Vienna RNA Secondary Structure Server

by Ivo L. Hofacker - Nucleic Acids Res , 2003
"... The Vienna RNA secondary structure server provides a web interface to the most frequently used functions of the Vienna RNA software package for the analysis of RNA secondary structures. It currently o#ers prediction of secondary structure from a single sequence, prediction of the consensus secondary ..."
Abstract - Cited by 611 (23 self) - Add to MetaCart
The Vienna RNA secondary structure server provides a web interface to the most frequently used functions of the Vienna RNA software package for the analysis of RNA secondary structures. It currently o#ers prediction of secondary structure from a single sequence, prediction of the consensus

Protein Secondary Structure Prediction . . .

by David T. Jones - JO MOL B/O/. (1999) 292, 195-202 .GG , 1999
"... ..."
Abstract - Cited by 945 (19 self) - Add to MetaCart
Abstract not found

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

by Wolfgang Kabsch, Christian Sander , 1983
"... For a successful analysis of the relation between amino acid sequence and protein structure, an unambiguous and physically meaningful definition of secondary structure is essential. We have developed a set of simple and physically motivated criteria for secondary structure, programmed as a pattern-r ..."
Abstract - Cited by 2096 (5 self) - Add to MetaCart
For a successful analysis of the relation between amino acid sequence and protein structure, an unambiguous and physically meaningful definition of secondary structure is essential. We have developed a set of simple and physically motivated criteria for secondary structure, programmed as a pattern

Fast Folding and Comparison of RNA Secondary Structures (The Vienna RNA Package)

by Ivo L. Hofacker, Walter Fontana, Peter F. Stadler, L. Sebastian Bonhoeffer, Manfred Tacker, Peter Schuster
"... Computer codes for computation and comparison of RNA secondary structures, the Vienna RNA package, are presented, that are based on dynamic programming algorithms and aim at predictions of structures with minimum free energies as well as at computations of the equilibrium partition functions and bas ..."
Abstract - Cited by 809 (117 self) - Add to MetaCart
Computer codes for computation and comparison of RNA secondary structures, the Vienna RNA package, are presented, that are based on dynamic programming algorithms and aim at predictions of structures with minimum free energies as well as at computations of the equilibrium partition functions

Prediction of Protein Secondary Structure at Better than 70% Accuracy

by Burkhard Rost, Chris Sander , 1993
"... ..."
Abstract - Cited by 759 (40 self) - Add to MetaCart
Abstract not found

PF: Secondary structure prediction for aligned RNA sequences.

by Ivo L Hofacker , Martin Fekete , Peter F Stadler - J Mol Biol , 2002
"... Most functional RNA molecules have characteristic secondary structures that are highly conserved in evolution. Here we present a method for computing the consensus structure of a set aligned RNA sequences taking into account both thermodynamic stability and sequence covariation. Comparison with phy ..."
Abstract - Cited by 331 (43 self) - Add to MetaCart
Most functional RNA molecules have characteristic secondary structures that are highly conserved in evolution. Here we present a method for computing the consensus structure of a set aligned RNA sequences taking into account both thermodynamic stability and sequence covariation. Comparison

Knowledge-based protein secondary structure assignment

by Dmitrij Frishman, Patrick Argos - Proteins , 1995
"... ABSTRACT We have developed an auto-matic algorithm STRIDE for protein secondary structure assignment from atomic coordinates based on the combined use of hydrogen bond energy and statistically derived backbone tor-sional angle information. Parameters of the pattern recognition procedure were optimiz ..."
Abstract - Cited by 324 (2 self) - Add to MetaCart
ABSTRACT We have developed an auto-matic algorithm STRIDE for protein secondary structure assignment from atomic coordinates based on the combined use of hydrogen bond energy and statistically derived backbone tor-sional angle information. Parameters of the pattern recognition procedure were

Predicting the secondary structure of globular proteins using neural networks models

by Ning Qian, Terrence J. Sejnowski - J. Molecular Biology , 1988
"... We present a new method for predicting the secondary structure of globular proteins based on non-linear neural network models. Network models learn from existing protein structures how to predict the secondary structure of local sequences of amino acids. The average success rate of our method on a t ..."
Abstract - Cited by 271 (2 self) - Add to MetaCart
We present a new method for predicting the secondary structure of globular proteins based on non-linear neural network models. Network models learn from existing protein structures how to predict the secondary structure of local sequences of amino acids. The average success rate of our method on a

Complete suboptimal folding of RNA and the stability of secondary structures

by Stefan Wuchty, Walter Fontana, Ivo L. Hofacker, Peter Schuster - BIOPOLYMERS 49:145–165 , 1999
"... An algorithm is presented for generating rigorously all suboptimal secondary structures between the minimum free energy and an arbitrary upper limit. The algorithm is particularly fast in the vicinity of the minimum free energy. This enables the efficient approximation of statistical quantities, s ..."
Abstract - Cited by 215 (23 self) - Add to MetaCart
An algorithm is presented for generating rigorously all suboptimal secondary structures between the minimum free energy and an arbitrary upper limit. The algorithm is particularly fast in the vicinity of the minimum free energy. This enables the efficient approximation of statistical quantities

Local similarity in RNA secondary structures

by Matthias Höchsmann , 2003
"... We present a systematic treatment of alignment distance and local similarity algorithms on trees and forests. We build upon the tree alignment algorithm for ordered trees given by Jiang et. al (1995) and extend it to calculate local forest alignments, which is essential for finding local similar reg ..."
Abstract - Cited by 110 (4 self) - Add to MetaCart
regions in RNA secondary structures. The time complexity of our algorithm is O(|F1 | ·|F2 | ·deg(F1) · deg(F2) · (deg(F1) +deg(F2)) where |Fi | is the number of nodes in forest Fi and deg(Fi) is the degree of Fi. We provide carefully engineered dynamic programming implementations using dense, two
Next 10 →
Results 1 - 10 of 14,547
Powered by: Apache Solr
  • About CiteSeerX
  • Submit and Index Documents
  • Privacy Policy
  • Help
  • Data
  • Source
  • Contact Us

Developed at and hosted by The College of Information Sciences and Technology

© 2007-2019 The Pennsylvania State University