Results 1 - 10 of 23,049

R: RNA sequence analysis using covariance models. Nucleic Aeids Res

by Sean R. Eddy, Richard Durbin , 1994
"... We describe a general approach to several RNA sequence analysis problems using probabilistic models that flexibly describe the secondary structure and primary sequence consensus of an RNA sequence family. We call these models 'covariance models'. A covariance model of tRNA sequences is an ..."
Abstract - Cited by 367 (9 self) - Add to MetaCart
We describe a general approach to several RNA sequence analysis problems using probabilistic models that flexibly describe the secondary structure and primary sequence consensus of an RNA sequence family. We call these models 'covariance models'. A covariance model of tRNA sequences

PF: Secondary structure prediction for aligned RNA sequences.

by Ivo L Hofacker , Martin Fekete , Peter F Stadler - J Mol Biol , 2002
"... Most functional RNA molecules have characteristic secondary structures that are highly conserved in evolution. Here we present a method for computing the consensus structure of a set aligned RNA sequences taking into account both thermodynamic stability and sequence covariation. Comparison with phy ..."
Abstract - Cited by 331 (43 self) - Add to MetaCart
Most functional RNA molecules have characteristic secondary structures that are highly conserved in evolution. Here we present a method for computing the consensus structure of a set aligned RNA sequences taking into account both thermodynamic stability and sequence covariation. Comparison

Compilation of tRNA sequences and sequences of tRNA genes

by Mathias Sprinzl, Carsten Horn, Melissa Brown, Anatoli Ioudovitch, Sergey Steinberg - Nucleic Acids Res , 1998
"... Sequences of 3279 sequences of tRNA genes and tRNAs published up to December 1996 are included in the compilation. Alignment of the sequences, which is most compatible with the tRNA phylogeny and known threedimensional structures of tRNA, is used. Sequences and references are available under ..."
Abstract - Cited by 376 (4 self) - Add to MetaCart
Sequences of 3279 sequences of tRNA genes and tRNAs published up to December 1996 are included in the compilation. Alignment of the sequences, which is most compatible with the tRNA phylogeny and known threedimensional structures of tRNA, is used. Sequences and references are available under

miRBase: microRNA sequences, targets and gene nomenclature

by Sam Griffiths-jones, Russell J. Grocock, Stijn Van Dongen, Alex Bateman, Anton J. Enright - Nucleic Acids Res , 2006
"... nomenclature ..."
Abstract - Cited by 399 (5 self) - Add to MetaCart
nomenclature

RNA-sequencing

by Matthew E. Ritchie, Belinda Phipson, Di Wu, Yifang Hu, Charity W. Law, Wei Shi, Gordon K. Smyth , 2014
"... limma powers differential expression analyses for ..."
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limma powers differential expression analyses for

RNA sequencing

by Robert A
"... tissue-resident T cell repertoires by ..."
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tissue-resident T cell repertoires by

RNA-sequencing.

by Wei Zhao, Ying Wang, Nan Gao, Zhifeng Han, Haixiang Yu , 2014
"... Curcumin; enrichment analysis; lung squamous ..."
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Curcumin; enrichment analysis; lung squamous

Comparative RNA sequencing reveals substantial

by George H. Perry, Páll Melsted, John C. Marioni, Et Al, Email Alerting, George H. Perry, Páll Melsted, John C. Marioni, Ying Wang, Russell Bainer, Joseph K. Pickrell, Katelyn Michelini, Sarah Zehr, Anne D. Yoder, Matthew Stephens, Jonathan K. Pritchard, Yoav Gilad , 2012
"... Comparative RNA sequencing reveals substantial genetic variation ..."
Abstract - Cited by 14 (0 self) - Add to MetaCart
Comparative RNA sequencing reveals substantial genetic variation

miRBase: integrating microRNA annotation and deep-sequencing data

by Ana Kozomara, Sam Griffiths-jones - Nucleic Acids Res , 2011
"... data ..."
Abstract - Cited by 545 (11 self) - Add to MetaCart
Abstract not found

The Vienna RNA Secondary Structure Server

by Ivo L. Hofacker - Nucleic Acids Res , 2003
"... The Vienna RNA secondary structure server provides a web interface to the most frequently used functions of the Vienna RNA software package for the analysis of RNA secondary structures. It currently o#ers prediction of secondary structure from a single sequence, prediction of the consensus secondary ..."
Abstract - Cited by 611 (23 self) - Add to MetaCart
The Vienna RNA secondary structure server provides a web interface to the most frequently used functions of the Vienna RNA software package for the analysis of RNA secondary structures. It currently o#ers prediction of secondary structure from a single sequence, prediction of the consensus
Results 1 - 10 of 23,049