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23,049
R: RNA sequence analysis using covariance models. Nucleic Aeids Res
, 1994
"... We describe a general approach to several RNA sequence analysis problems using probabilistic models that flexibly describe the secondary structure and primary sequence consensus of an RNA sequence family. We call these models 'covariance models'. A covariance model of tRNA sequences is an ..."
Abstract
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Cited by 367 (9 self)
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We describe a general approach to several RNA sequence analysis problems using probabilistic models that flexibly describe the secondary structure and primary sequence consensus of an RNA sequence family. We call these models 'covariance models'. A covariance model of tRNA sequences
PF: Secondary structure prediction for aligned RNA sequences.
- J Mol Biol
, 2002
"... Most functional RNA molecules have characteristic secondary structures that are highly conserved in evolution. Here we present a method for computing the consensus structure of a set aligned RNA sequences taking into account both thermodynamic stability and sequence covariation. Comparison with phy ..."
Abstract
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Cited by 331 (43 self)
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Most functional RNA molecules have characteristic secondary structures that are highly conserved in evolution. Here we present a method for computing the consensus structure of a set aligned RNA sequences taking into account both thermodynamic stability and sequence covariation. Comparison
Compilation of tRNA sequences and sequences of tRNA genes
- Nucleic Acids Res
, 1998
"... Sequences of 3279 sequences of tRNA genes and tRNAs published up to December 1996 are included in the compilation. Alignment of the sequences, which is most compatible with the tRNA phylogeny and known threedimensional structures of tRNA, is used. Sequences and references are available under ..."
Abstract
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Cited by 376 (4 self)
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Sequences of 3279 sequences of tRNA genes and tRNAs published up to December 1996 are included in the compilation. Alignment of the sequences, which is most compatible with the tRNA phylogeny and known threedimensional structures of tRNA, is used. Sequences and references are available under
miRBase: microRNA sequences, targets and gene nomenclature
- Nucleic Acids Res
, 2006
"... nomenclature ..."
Comparative RNA sequencing reveals substantial
, 2012
"... Comparative RNA sequencing reveals substantial genetic variation ..."
Abstract
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Cited by 14 (0 self)
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Comparative RNA sequencing reveals substantial genetic variation
miRBase: integrating microRNA annotation and deep-sequencing data
- Nucleic Acids Res
, 2011
"... data ..."
The Vienna RNA Secondary Structure Server
- Nucleic Acids Res
, 2003
"... The Vienna RNA secondary structure server provides a web interface to the most frequently used functions of the Vienna RNA software package for the analysis of RNA secondary structures. It currently o#ers prediction of secondary structure from a single sequence, prediction of the consensus secondary ..."
Abstract
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Cited by 611 (23 self)
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The Vienna RNA secondary structure server provides a web interface to the most frequently used functions of the Vienna RNA software package for the analysis of RNA secondary structures. It currently o#ers prediction of secondary structure from a single sequence, prediction of the consensus
Results 1 - 10
of
23,049