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Epimerase Active Domain of Pseudomonas aeruginosa AlgG, a Protein That Contains a Right-Handed -Helix

by Michael J. Franklin, Stephanie A. Douthit, Mensur Dlakic, Dennis E. Ohman, Stephanie A. Douthit, Mensur Dlakic, Dennis E. Ohman, Michael J. Franklin , 2004
"... This article cites 83 articles, 34 of which can be accessed free ..."
Abstract - Cited by 3 (1 self) - Add to MetaCart
This article cites 83 articles, 34 of which can be accessed free

The Nuclear Magnetic Resonance of CCCC RNA Reveals a Right- Handed Helix, and Revised Parameters for AMBER Force Field Torsions Improve Structural Predictions from Molecular Dynamics

by Douglas H. Turner
"... ABSTRACT: The sequence dependence of RNA energetics is important for predicting RNA structure. Hairpins with Cn loops are consistently less stable than hairpins with other loops, which suggests the structure of Cn regions could be unusual in the “unfolded ” state. For example, previous nuclear magne ..."
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hairpin loop, are consistent with a right-handed A-form-like helix. Comparisons between NMR spectra and molecular dynamics (MD) simulations suggest that recent reparametrizations, parm99χ_YIL and parm99TOR, of the AMBER parm99 force field improve the agreement between structural features for C4 determined

Analysis and Prediction of Helix–Helix Interactions in Membrane Channels and Transporters

by Peter Werner Hildebr, Stephan Lorenzen, Andrean Goede, Robert Preissner
"... ABSTRACT Membrane proteins span a large variety of different functions such as cell-surface re-ceptors, redox proteins, ion channels, and transport-ers. Proteins with functional pores show different characteristics of helix–helix packing as other helical membrane proteins. We found that the helix–he ..."
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contacts of 13 nonhomologous high-resolution struc-tures of membrane channels and transporters are mainly accomplished by weakly polar amino acids (G> S> T> F) that preferably create contacts every fourth residue, typical for right-handed helix cross-ings. There is a strong correlation between

Biochemical Journal Immediate Publication. Published on 16 Dec 2003 as manuscript BJ20031860 Diversity of Folds in Animal Toxins Acting on Ion Channels

by Stéphanie Mouhat, Besma Jouirou, Amor Mosbah, Michel De Waard, Jean-marc Sabatier
"... SK channels, small conductance Ca 2+-activated K + channels; IK channels, intermediate conductance Ca 2+-activated K + channels; BK channels, big conductance Ca 2+-activated K + channels; Nav channels, voltage-gated Na + channels (mammalian); ICK motif, “Inhibitor Cystine Knot ” architectural motif; ..."
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; α/β scaffold, an architectural motif in which an helical structure is connected to a β-sheet by two disulfide bridges; 310, right-handed helix of the 310 type (3 amino acid residues per turn of helix); α, right-handed helix of the 3.613 type (3.6 amino acid residues per turn of helix) also termed α-helix

Conformational studies on peptides with proline in the right-handed a-helical region. Biopolymers

by R. Sankararamakrishnan, Saraswathi Vishveshwara , 1990
"... The proline residues in proteins are known to play an important structural role. Recently, the role of a proline residue in the middle of right-handed a-helical segments of peptides has been the focus of attention. This role seems to be particularly important in the case of membrane proteins and in ..."
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-Pro in longer segments of right-handed a-helix. This is achieved due to minor variations in some of the internal parameters. Deviations in the backbone parameters of proline in the right-handed a-helix lead to a kink of about 23 " in the helix axis. These deviations have been characterized and a set

Dispatch

by unknown authors
"... polarised light into plane polarised light, which the underlying seven receptors are then able to detect. Interestingly, the eighth cell microvilli are orthogonal to each other in the two ommatidial rows, meaning that they introduce orthogonal retardations into circularly polarised beams. Referring ..."
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back to Figure 1C, this means that one will produce plane polarised light from a right-hand helix, and the other from a left-hand helix. This accounts for the animals ’ ability to distinguish right-hand and left-hand polarised light. In scarab beetles, the highly coloured left-hand circularly polarised

Crystalline tubes of myosin subfragment-2 showing the coiled-coil and molecular interaction geometry

by Roy A. Quinlan, Murray Stewart - J. Celt Biol , 1987
"... Abstract. We have produced crystalline tubes of chicken breast myosin long subfragment-2 that show order to resolutions better than 2 nm. The tubes were formed from a thin sheet in which the myosin long subfragment-2 molecules were arranged on an approximately rectangular crystalline lattice with a ..."
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= 14.1 + 0.2 nm and b-- 3.9 + 0.1 nm in projection. Shadowing indicated that the tube wall was ~7 nm thick and that the sheets from which it was formed followed a right-handed helix. Superposition of the lattices from the top and bottom of the tube produced a moire pattern in negatively stained

Substructure of Inner Dynein Arms, Radial Spokes, and the Central Pair/Projection Complex of Cilia and Flagella

by Ursula W. Goodenough, John E. Heuser
"... ABSTRACT The substructure of the components of the axoneme interior--the inner dynein arms, the radial spokes, and the central pair/projection complex--was analyzed for Chlamy-domonas, Tetrahymena, Strongelocentrotus, and Mnemiopsis using the quick-freeze, deep-etch technique. The inner arms are sho ..."
Abstract - Cited by 45 (2 self) - Add to MetaCart
-start right-handed helix with a 288-nm rise; the central pair makes a shallow left-handed twist. The spoke heads are shown to be made up of four major subunits; two bind to the spoke shaft and two bind to a pair of central-sheath projections. Most motile cilia contain outer and inner dynein arms, radial

J.A.Taboury and E.Taillandier

by unknown authors , 1985
"... The secondary structures of poly(dA-dC;.<dG-dT> were studied using CD and IR spectroscopies. We give spectroscopie evidence of secondary structure transitions of poly<dA-dC>.(dG-dT> frgra a B to a Z-like helix, induced by transition metal ions (Ni~*> in presence of high concentrati ..."
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water activity due to the high alkali salt concentration ^ we also show that the CD spectrum obtained in presence of Cs * ions and characterized by a negative band at 275 nra, cannot be interpreted in terms of Z-like left-handed helix but reflects a modified B right-handed helix.

Chiral N-substituted glycines can form stable helical conformations. Folding & Design

by Kent Kirshenbaum, Alexis Falicov, L Dunbrack, Ken A Dill, Ronald N Zuckermann, Fred E Cohen , 1997
"... glycines (peptoids) have emerged as promising tools for drug discovery. Recent work on medium-length peptoids containing chiral centers in their sidechains has demonstrated the existence of stable chiral conformations in solution. In this report, we explore the conformational properties of these Nα ..."
Abstract - Cited by 2 (0 self) - Add to MetaCart
on the available backbone conformations. These results are supported by semi-empirical quantum mechanical calculations and coincide qualitatively with simple steric considerations. They suggest that an octamer of (S)-N-(1-phenylethyl)glycine should form a right-handed helix with cis amide bonds, similar
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