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gene cluster

by unknown authors
"... The rice plastid genes psaA and psaB encoding the two apoproteins ofP700 chlorophyll a protein complex of photosystem I reac-tion center, and the putative rpsl4 gene for ribosomal protein Sl4, are organized into a transcription u it. Northern blot analyses revealed that the polycistronic mRNA is tra ..."
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The rice plastid genes psaA and psaB encoding the two apoproteins ofP700 chlorophyll a protein complex of photosystem I reac-tion center, and the putative rpsl4 gene for ribosomal protein Sl4, are organized into a transcription u it. Northern blot analyses revealed that the polycistronic m

Potential Plastid Sigma Factors of RNA Polymerase in Rice:

by Cell Physiology, Yoshiki Kubota, Akio Miyao, Hirohiko Hirochika, Yuzuru Tozawa, Hiroyuki Yasuda, Yuichi Tsunoyama, Yasuo Niwa, Makoto Shirai, Munehiko Asayama
"... Subject area: (3) Gene structure and expression Two black and white figures, two color figures, two supplementary black and white figures, and one optional figure for Figure 2. ..."
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Subject area: (3) Gene structure and expression Two black and white figures, two color figures, two supplementary black and white figures, and one optional figure for Figure 2.

Genome Fragmentation Is Not Confined to the Peridinin Plastid in Dinoflagellates

by Marianne A. Minge¤b, Tove M. Gabrielsen¤c, Er J. Nederbragt, Kamran Shalchian-tabrizi, Christian Otis, Monique Turmel, Claude Lemieux, Kjetill S. Jakobsen
"... When plastids are transferred between eukaryote lineages through series of endosymbiosis, their environment changes dramatically. Comparison of dinoflagellate plastids that originated from different algal groups has revealed convergent evolution, suggesting that the host environment mainly influence ..."
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the mini-circles of the peridin-containing plastids, we have investigated its genome by in-depth sequencing using 454 pyrosequencing technology, PCR and clone library analysis. Sequence analyses show several genes with significantly higher copy numbers than present in the chromosome. These genes are most

Nuclear encoding of a plastid σ factor in rice and its tissue- and light-dependent expression

by Yuzuru Tozawa, Kan Tanaka, Hideo Takahashi, Kyo Wakasa , 1997
"... DDBJ/EMBL/GenBank accession no. AB005290 A full-length cDNA encoding a putative σ factor for a plastid RNA polymerase was isolated from the higher plant Oryza sativa. The nucleotide sequence of the corresponding nuclear gene, named Os-sigA (O.sativa sigma A), predicts a polypeptide of 519 amino acid ..."
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DDBJ/EMBL/GenBank accession no. AB005290 A full-length cDNA encoding a putative σ factor for a plastid RNA polymerase was isolated from the higher plant Oryza sativa. The nucleotide sequence of the corresponding nuclear gene, named Os-sigA (O.sativa sigma A), predicts a polypeptide of 519 amino

Genes of Cyanobacterial Origin in Plant Nuclear Genomes Point to a Heterocyst-Forming Plastid Ancestor

by John F. Allen, William Martin, Tal Dagan
"... Plastids are descended from a cyanobacterial symbiosis which occurred over 1.2 billion years ago. During the course of endosymbiosis, most genes were lost from the cyanobacterium’s genome and many were relocated to the host nucleus through endosymbiotic gene transfer (EGT). The issue of how many gen ..."
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Plastids are descended from a cyanobacterial symbiosis which occurred over 1.2 billion years ago. During the course of endosymbiosis, most genes were lost from the cyanobacterium’s genome and many were relocated to the host nucleus through endosymbiotic gene transfer (EGT). The issue of how many

Ectopic Overexpression of The Transcription Factor OsGLK1 Induces Chloroplast Development in Non-Green

by Rice Cells, Hidemitsu Nakamura, Masayuki Muramatsu, Makoto Hakata, Osamu Ueno, Yoshiaki Nagamura, Hirohiko Hirochika, Makoto Takano, Hiroaki Ichikawa
"... For systematic and genome-wide analyses of rice gene functions, we took advantage of the full-length cDNA overexpresser (FOX) gene-hunting system and generated> 12 000 independent FOX-rice lines from> 25 000 rice calli treated with the rice-FOX Agrobacterium library. We found two FOX-rice line ..."
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number of nucleus-encoded genes involved in chloroplast functions were highly expressed and transcripts of plastid-encoded genes, psaA, psbA and rbcL, increased in the OsGLK1-FOX calli. Transmission electron microscopy showed the existence of differentiated chloroplasts with grana stacks

Phylogenetic artifacts can be caused by leucine, serine, and arginine codon usage heterogeneity: dinoXagellate plastid origins as a case study

by Yuji Inagaki, Alastair G. B. Simpson, Joel B. Dacks, Andrew J. Roger - Syst. Biol , 2004
"... Abstract.—Phylogenetic analyses of first and second codon positions (DNA1+2 analysis) and amino acid sequences (protein analysis) are often thought to provide similar estimates of deep-level phylogeny. However, here we report a novel artifact influencing DNA level phylogenetic inference of protein-c ..."
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-coding genes introduced by codon usage heterogeneity that causes significant incongruities between DNA1+2 and protein analyses. DNA1+2 analyses of plastid-encoded psbA genes (encoding of photosystem II D1 proteins) strongly suggest a relationship between haptophyte plastids and typical (peridinin

1 Macroarray for studying chloroplast gene expression profiles associated with the initial development of wheat

by Siniauskaya M, Naydenov N, Davydenko O
"... Chloroplasts, as photosynthetic carbon assimilating organelles, play an essential role in plants throughout their development. We have previously devised a mitochondrial macroarray using a set of rice and wheat mitochondrial genes to study their expression associated with biogenesis and initial deve ..."
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Chloroplasts, as photosynthetic carbon assimilating organelles, play an essential role in plants throughout their development. We have previously devised a mitochondrial macroarray using a set of rice and wheat mitochondrial genes to study their expression associated with biogenesis and initial

DISCOVERY NOTES Open Access Discovery notes Lack of conservation of bacterial type promoters in

by Vassily A Lyubetsky, Lev I Rubanov, R V Seliverstov, Xanthophyceae Cryptophyta
"... Abstract: We demonstrate the scarcity of conserved bacterial-type promoters in plastids of Streptophyta and report widely conserved promoters only for genes psaA, psbA, psbB, psbE, rbcL. Among the reasonable explanations are: evolutionary changes of sigma subunit paralogs and phage-type RNA polymera ..."
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Abstract: We demonstrate the scarcity of conserved bacterial-type promoters in plastids of Streptophyta and report widely conserved promoters only for genes psaA, psbA, psbB, psbE, rbcL. Among the reasonable explanations are: evolutionary changes of sigma subunit paralogs and phage-type RNA

Characterization of the Light-Responsive Promoter of Rice Chloroplast psbD-C Operon and the Sequence-Specific DNA Binding Factor

by Shu-chen Grace Chen
"... The transcription of rice plastid psbD-psbC genes en-coding photosystem II reaction center protein D2 and chlo-rophyll a-binding protein CP43 is closely regulated by light. To elucidate the sequence requirement for the light-re-sponsive promoter of psbD-psbC operon, transcriptional analysis of the r ..."
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The transcription of rice plastid psbD-psbC genes en-coding photosystem II reaction center protein D2 and chlo-rophyll a-binding protein CP43 is closely regulated by light. To elucidate the sequence requirement for the light-re-sponsive promoter of psbD-psbC operon, transcriptional analysis
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