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Ribosomal protein S14 transcripts are edited in Oenothera mitochondria

by Wolfgang Schuster, Michael Unseld, Bernd Wissinger, Axel Brennicke - Nucleic Acids Res , 1990
"... The gene encoding ribosomal protein S14 (rps14) in Oenothera mitochondria is located upstream of the cytochrome b gene (cob). Sequence analysis of independently derived cDNA clones covering the entire rps14 coding region shows two nucleotides edited from the genomic DNA to the mRNA derived sequences ..."
Abstract - Cited by 2 (0 self) - Add to MetaCart
The gene encoding ribosomal protein S14 (rps14) in Oenothera mitochondria is located upstream of the cytochrome b gene (cob). Sequence analysis of independently derived cDNA clones covering the entire rps14 coding region shows two nucleotides edited from the genomic DNA to the mRNA derived

Organization and Transcription of a Putative Gene Cluster Encoding Ribosomal Protein S14 and an Oligopeptide Permease-like Protein in the Cyanobacterium Synechococcus sp. Strain PCC 6301

by Tsuneo Fujishiro, Takakazu Kanekoj, Masahiro Sugiura, Mamoru Sugita , 1996
"... A 2.0-kbp Pst I DNA fragment of the unicellular cyanobacterium Synechococcus sp. strain PCC 6301 genome contains two open reading frames (ORFs). The first ORF of 100 codons potentially encodes a polypeptide having 47 % amino acid identity to Escherichia coli ribosomal protein S14, suggesting it as a ..."
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A 2.0-kbp Pst I DNA fragment of the unicellular cyanobacterium Synechococcus sp. strain PCC 6301 genome contains two open reading frames (ORFs). The first ORF of 100 codons potentially encodes a polypeptide having 47 % amino acid identity to Escherichia coli ribosomal protein S14, suggesting

Nodeotkle sequence of Marchantia polymorpha cfaloropbst DNA: a region possibly encoding three tRNAs and three proteins including a bomologue of E. coli ribosomal protein S14

by Kazuhiko Umesono, Hachiro Inokuchi, Kanji Ohyama, Haruo Ozeki , 1984
"... The nucleotlde sequence of a region of Marchantia polymorpha chloroplast DNA was determined. On this DNA sequence (3.38kb), three open reading frames (ORFs) and three putative tRNA genes were detected in the following order:-ORF701-tRNASer(UGA)_0RF702-tRNAGly(GCC)-initiator tRNAMet(CAU)-ORF703-. The ..."
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-. The ORF7O3 is composed of 100 codons in which those for lysine (15Z) and arginine (HZ) are abundant, and could be accounted for as a counterpart of E_. coli ribosomal protein S14 since they share 45 % homology in the amino acid sequences. The 0RF701 appears to code for a membrane protein, showing a

http://www.fz-juelich.de/nic-series/volume36 The Zinc-Finger Motif of T.thermophilus Ribosomal Protein S14 and the Functionality of E.coli Ribosomes

by Of E. Coli Ribosomes, G. Papadopoulos, M. A. Xaplanteri, F. Leontiadou, Th. Choli-papadopoulou, D. L. Kalpaxis, Ulrich H. E. Hansmann, Jan Meinke, Ipan Mohanty, Olav Zimmermann (editors, Georgios Papadopoulos, Maria A. Xaplanteri, Fotini Leontiadou, Theodora Choli-papadopoulou, Dimitrios L. Kalpaxis
"... published in ..."
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published in

The Complete Atomic Structure of the Large Ribosomal Subunit at 2.4 Å Resolution

by Nenad Ban, Poul Nissen, Jeffrey Hansen, Peter B. Moore, Thomas A. Steitz - Science , 2000
"... ation, and termination phases of protein synthesis. Because the structures of several DNA and RNA polymerases have been determined at atomic resolution, the mechanisms of DNA and RNA synthesis are both well understood. Determination of the structure of the ribosome, however, has proven a daunting t ..."
Abstract - Cited by 539 (13 self) - Add to MetaCart
ation, and termination phases of protein synthesis. Because the structures of several DNA and RNA polymerases have been determined at atomic resolution, the mechanisms of DNA and RNA synthesis are both well understood. Determination of the structure of the ribosome, however, has proven a daunting

Finding motifs using random projections

by Jeremy Buhler, Martin Tompa , 2001
"... Pevzner and Sze [23] considered a precise version of the motif discovery problem and simultaneously issued an algorithmic challenge: find a motif Å of length 15, where each planted instance differs from Å in 4 positions. Whereas previous algorithms all failed to solve this (15,4)-motif problem, Pevz ..."
Abstract - Cited by 285 (6 self) - Add to MetaCart
, Pevzner and Sze introduced algorithms that succeeded. However, their algorithms failed to solve the considerably more difficult (14,4)-, (16,5)-, and (18,6)motif problems. We introduce a novel motif discovery algorithm based on the use of random projections of the input’s substrings. Experiments

The lin-4 regulatory RNA controls developmental timing in Caenorhabditis elegans by blocking LIN-14 protein synthesis after the initiation of translation

by Philip H. Olsen, Victor Ambros - Dev. Biol , 1999
"... lin-4 encodes a small RNA that is complementary to sequences in the 3 � untranslated region (UTR) of lin-14 mRNA and that acts to developmentally repress the accumulation of LIN-14 protein. This repression is essential for the proper timing of numerous events of Caenorhabditis elegans larval develop ..."
Abstract - Cited by 255 (7 self) - Add to MetaCart
lin-4 encodes a small RNA that is complementary to sequences in the 3 � untranslated region (UTR) of lin-14 mRNA and that acts to developmentally repress the accumulation of LIN-14 protein. This repression is essential for the proper timing of numerous events of Caenorhabditis elegans larval

Lysine acetylation targets protein complexes and co-regulates major cellular functions

by Chunaram Choudhary, Chanchal Kumar, Florian Gnad, Michael L. Nielsen, Michael Rehman, Tobias C. Walther, Jesper V. Olsen, Matthias Mann - Science , 2009
"... Lysine acetylation is a reversible posttranslational modification of proteins and plays a key role in regulating gene expression. Technological limitations have so far prevented a global analysis of lysine acetylation’s cellular roles. We used high-resolution mass spectrometry to identify 3600 lysin ..."
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Lysine acetylation is a reversible posttranslational modification of proteins and plays a key role in regulating gene expression. Technological limitations have so far prevented a global analysis of lysine acetylation’s cellular roles. We used high-resolution mass spectrometry to identify 3600

The nuclear DNA base 5-hydroxymethylcytosine is present

by Skirmantas Kriaucionis, Nathaniel Heintz - in Purkinje neurons and the brain. Science 324:929–30
"... Despite the importance of epigenetic regulation in neurological disorders, little is known about neuronal chromatin. Cerebellar Purkinje neurons have large and euchromatic nuclei, whereas granule cell nuclei are small and have a more typical heterochromatin distribution. While comparing the abundanc ..."
Abstract - Cited by 210 (2 self) - Add to MetaCart
of the fact thatribosomal proteins are assembled in the nucleolus of all cells. Consequently, transgenic mice containing ribosomal protein L10a fused to enhanced green fluorescent protein (EGFP)— for example, the Pcp2 bacTRAP and NeuroD1 bacTRAP lines that express in cerebellar Purkinje and granule neurons

doi:10.1155/2012/179402 Review Article Important Genes in the Pathogenesis of 5q- Syndrome and Their Connection with Ribosomal Stress and the Innate Immune System Pathway

by Ota Fuchs
"... permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Myelodysplastic syndrome (MDS) with interstitial deletion of a segment of the long arm of chromosome 5q [del(5q)] is characterized by bone marrow erythroid hyperplasia, atypical mega ..."
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coding microRNAs (miR-143, miR-145). In 5q-syndrome one allele is deleted that accounts for haploinsufficiency of these genes. The mechanism of erythroid failure appears to involve the decreased expression of the ribosomal protein S14 (RPS14) gene and the upregulation of the p53 pathway by ribosomal
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