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Altered rate of fibronectin matrix assembly by deletion of the first type III repeats

by Jan L. Sechler, Yoshikazu Takada, Jean E. Schwarzbauer - J. Cell Biol , 1996
"... Abstract. The assembly of fibronectin (FN) into a fibrillar matrix is a complex stepwise process that involves binding to integrin receptors as well as interactions between FN molecules. To follow the progression of matrix formation and determine the stages during which specific domains function, we ..."
Abstract - Cited by 20 (5 self) - Add to MetaCart
, we have developed cell lines that lack an endogenous FN matrix but will form fibrils when provided with exogenous FN. Recombinant FNs (recFN) containing deletions of either the RGD cell-binding sequence (RGD-) or the first type III repeats (FNAIIII_7) including the IIIx FN binding site were generated

Human DNA methylomes at base resolution show widespread epigenomic differences.

by Ryan Lister , Mattia Pelizzola , Robert H Dowen , R David Hawkins , Gary Hon , Julian Tonti-Filippini , Joseph R Nery , Leonard Lee , Zhen Ye , Que-Minh Ngo , Lee Edsall , Jessica Antosiewicz-Bourget , Ron Stewart , Victor Ruotti , A Harvey Millar , James A Thomson , Bing Ren , Joseph R Ecker - Nature, , 2009
"... DNA cytosine methylation is a central epigenetic modification that has essential roles in cellular processes including genome regulation, development and disease. Here we present the first genome-wide, single-base-resolution maps of methylated cytosines in a mammalian genome, from both human embryo ..."
Abstract - Cited by 401 (6 self) - Add to MetaCart
enrichment in gene bodies and depletion in protein binding sites and enhancers. Non-CG methylation disappeared upon induced differentiation of the embryonic stem cells, and was restored in induced pluripotent stem cells. We identified hundreds of differentially methylated regions proximal to genes involved

COMPARATIVE CELL RESPONSE TO ARTIFICIAL EXTRACELLULAR MATRIX PROTEINS CONTAINING THE RGD AND CS5 CELL-BINDING DOMAINS

by unknown authors
"... This study addresses endothelial cell adhesion and spreading on a family of artificial extracellular matrix (aECM) proteins designed for application in small-diameter vascular grafts. The aECM proteins contain domains derived from elastin and from fibronectin. aECM 1 contains the RGD sequence from t ..."
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can be modulated through choice of cell-binding domain, and (ii) recommend the RGD sequence for applications that require rapid endothelial cell spreading and matrix adhesion.

Bioprospector: Discovering Conserved Dna Motifs In Upstream Regulatory Regions Of Co-Expressed Genes

by X. Liu, D. L. Brutlag, J. S. Liu - Pac. Symp. Biocomput , 2001
"... ms. For a copy of the program and documentation for UNIX systems, please contact xliu@smi.stanford.edu. 1 Introduction Over the last ten years, genomic sequencing has started in over 600 organisms, and over 50 complete genomes are sequenced. The DNA microarray technology permits the measurement o ..."
Abstract - Cited by 354 (23 self) - Add to MetaCart
the upstream region of genes in the same expression pattern group and look for sequence motifs. These motifs might be the regulatory signal (most likely a transcriptional protein binding site) that causes these genes to respond similarly to 2 developmental or environmental changes. Information on expressions

Transcription Factors: Genome-Wide Comparative Analysis Among Eukaryotes

by J. L. Riechmann, J. Heard, G. Martin, L. Reuber, C. -z. Jiang, J. Keddie, L. Adam, O. Pineda, O. J. Ratcliffe, R. R. Samaha, R. Creelman, M. Pilgrim, P. Broun, J. Z. Zhang, D. Gh, B. K. Sherman, G. -l. Yu - Ratcliffe OJ, Samaha RR, Creelman R, Pilgrim M, Broun P, Zhang JZ, Ghandehari D, Sherman BK, Yu G-L: Arabidopsis
"... The completion of the Arabidopsis thaliana genome sequence allows a com-parative analysis of transcriptional regulators across the three eukaryotic king-doms. Arabidopsis dedicates over 5 % of its genome to code for more than 1500 transcription factors, about 45 % of which are from families speciÞc ..."
Abstract - Cited by 252 (3 self) - Add to MetaCart
The completion of the Arabidopsis thaliana genome sequence allows a com-parative analysis of transcriptional regulators across the three eukaryotic king-doms. Arabidopsis dedicates over 5 % of its genome to code for more than 1500 transcription factors, about 45 % of which are from families speciÞc

Stimulation of corneal epithelial migration by a synthetic peptide (PHSRN) corresponding to the second cell-binding site of fibronectin

by Kazuhiro Kimura , Atsushi Hattori , Yumiko Usui , Kayo Kitazawa , Masumi Naganuma , Koji Kawamoto , Shinichiro Teranishi , Motoyoshi Nomizu , Teruo Nishida
"... PURPOSE. Fibronectin plays an important role in the migration of corneal epithelial cells in vivo. The Arg-Gly-Asp (RGD) sequence in the principal cell binding domain of fibronectin mediates the interaction of fibronectin with integrins, whereas the Pro-His-Ser-Arg-Asn (PHSRN) sequence of fibronect ..."
Abstract - Cited by 1 (0 self) - Add to MetaCart
PURPOSE. Fibronectin plays an important role in the migration of corneal epithelial cells in vivo. The Arg-Gly-Asp (RGD) sequence in the principal cell binding domain of fibronectin mediates the interaction of fibronectin with integrins, whereas the Pro-His-Ser-Arg-Asn (PHSRN) sequence

Monoclonal Antibody Characterization ofTwo Distant Sites Required for Function of the Central Cell-binding Domain of Fibronectin in Cell Adhesion, Cell Migration, and Matrix Assembly

by Toshihiko Nagai, Naomi Yamakawa, Shin-ichi Aota, T Susan S. Yamada, Stevenk Akiyama, Kenneth Olden, Kenneth M. Yamada
"... Abstract. Site-directed mutagenesis studies have suggested that additional peptide information in the central cell-binding domain of fibronectin besides the minimal Arg-Gly-Asp (RGD) sequence is required for its full adhesive activity. The nature of this second, synergistic site was analyzed further ..."
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Abstract. Site-directed mutagenesis studies have suggested that additional peptide information in the central cell-binding domain of fibronectin besides the minimal Arg-Gly-Asp (RGD) sequence is required for its full adhesive activity. The nature of this second, synergistic site was analyzed

The cell attachment site on foot-and-mouth disease virus includes the amino acid sequence RGD (arginine-glycine-aspartic acid

by Graham Fox, R. Parry, Paul V. Barnett, Brian Mcginn, David J. Rowlands, Fred Brown - Journal of General Virology , 1989
"... The amino acid sequence RGD (arginine-glycine-aspartic acid) is highly conserved in the VPI protein of foot-and-mouth disease virus (FMDV), despite being situated in the immunodominant hypervariable region between amino acids 135 and 160. RGDcontaining proteins are known to be important in promoting ..."
Abstract - Cited by 86 (4 self) - Add to MetaCart
corresponding to a portion of the same hypervariable region but not containing the RGD sequence did not inhibit virus attachment under the same conditions. Antibody against the RGD region of VPI blocked attachment of the virus to BHK cells, and neutralizing monoclonal antibodies, which neutralize virus

CELL RESPONSE TO RGD DENSITY IN CROSSLINKED ARTIFICIAL EXTRACELLULAR MATRIX PROTEIN FILMS

by unknown authors
"... This study examines the ability of crosslinked artificial extracellular matrix (aECM) protein films to alter cell adhesion, spreading, and migration. The aECM proteins described herein were originally designed for application in small-diameter grafts and are composed of elastin-like structural repea ..."
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repeats and fibronectin cell-binding domains. aECM-RGD contains the RGD sequence from fibronectin, and aECM-RDG contains a scrambled cell-binding domain. Covalent attachment of poly(ethylene glycol) (PEG) to protein substrates reduced nonspecific cell adhesion to aECM-RDG-PEG but did not preclude sequence

Tyrosine phosphorylation of paxillin and pp125FAK accompanies cell adhesion to extracellulax matrix: a role in cytoskeletal assembly

by Keith Burridge, Christopher E. Turner, Lewis H. Romerw - J. Cell , 1992
"... Abstract. Cells in culture reveal high levels of protein tyrosine phosphorylation in their focal adhesions, the regions where cells adhere to the underlying substratum. We have examined the tyrosine phosphorylation of proteins in response to plating cells on extracellular matrix substrata. Rat embry ..."
Abstract - Cited by 152 (11 self) - Add to MetaCart
, but not on polylysine or on uncoated plastic. Integrin mediation of this effect was suggested by finding the same pattern of elevated tyrosine phosphorylation in cells plated on the cell-binding fragment of fibronectin and in ceils plated on a synthetic polymer containing multiple RGD sequences. We have identified one
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