Results 1  10
of
787,963
A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood
, 2003
"... The increase in the number of large data sets and the complexity of current probabilistic sequence evolution models necessitates fast and reliable phylogeny reconstruction methods. We describe a new approach, based on the maximumlikelihood principle, which clearly satisfies these requirements. The ..."
Abstract

Cited by 2109 (30 self)
 Add to MetaCart
. The core of this method is a simple hillclimbing algorithm that adjusts tree topology and branch lengths simultaneously. This algorithm starts from an initial tree built by a fast distancebased method and modifies this tree to improve its likelihood at each iteration. Due to this simultaneous adjustment
Maximum Likelihood Linear Transformations for HMMBased Speech Recognition
 Computer Speech and Language
, 1998
"... This paper examines the application of linear transformations for speaker and environmental adaptation in an HMMbased speech recognition system. In particular, transformations that are trained in a maximum likelihood sense on adaptation data are investigated. Other than in the form of a simple bias ..."
Abstract

Cited by 538 (65 self)
 Add to MetaCart
This paper examines the application of linear transformations for speaker and environmental adaptation in an HMMbased speech recognition system. In particular, transformations that are trained in a maximum likelihood sense on adaptation data are investigated. Other than in the form of a simple
Maximum Likelihood Phylogenetic Estimation from DNA Sequences with Variable Rates over Sites: Approximate Methods
 J. Mol. Evol
, 1994
"... Two approximate methods are proposed for maximum likelihood phylogenetic estimation, which allow variable rates of substitution across nucleotide sites. Three data sets with quite different characteristics were analyzed to examine empirically the performance of these methods. The first, called ..."
Abstract

Cited by 540 (28 self)
 Add to MetaCart
Two approximate methods are proposed for maximum likelihood phylogenetic estimation, which allow variable rates of substitution across nucleotide sites. Three data sets with quite different characteristics were analyzed to examine empirically the performance of these methods. The first, called
GMRES: A generalized minimal residual algorithm for solving nonsymmetric linear systems
 SIAM J. SCI. STAT. COMPUT
, 1986
"... We present an iterative method for solving linear systems, which has the property ofminimizing at every step the norm of the residual vector over a Krylov subspace. The algorithm is derived from the Arnoldi process for constructing an l2orthogonal basis of Krylov subspaces. It can be considered a ..."
Abstract

Cited by 2046 (40 self)
 Add to MetaCart
We present an iterative method for solving linear systems, which has the property ofminimizing at every step the norm of the residual vector over a Krylov subspace. The algorithm is derived from the Arnoldi process for constructing an l2orthogonal basis of Krylov subspaces. It can be considered
Additive Logistic Regression: a Statistical View of Boosting
 Annals of Statistics
, 1998
"... Boosting (Freund & Schapire 1996, Schapire & Singer 1998) is one of the most important recent developments in classification methodology. The performance of many classification algorithms can often be dramatically improved by sequentially applying them to reweighted versions of the input dat ..."
Abstract

Cited by 1719 (25 self)
 Add to MetaCart
data, and taking a weighted majority vote of the sequence of classifiers thereby produced. We show that this seemingly mysterious phenomenon can be understood in terms of well known statistical principles, namely additive modeling and maximum likelihood. For the twoclass problem, boosting can
Probabilistic Principal Component Analysis
 Journal of the Royal Statistical Society, Series B
, 1999
"... Principal component analysis (PCA) is a ubiquitous technique for data analysis and processing, but one which is not based upon a probability model. In this paper we demonstrate how the principal axes of a set of observed data vectors may be determined through maximumlikelihood estimation of paramet ..."
Abstract

Cited by 703 (5 self)
 Add to MetaCart
Principal component analysis (PCA) is a ubiquitous technique for data analysis and processing, but one which is not based upon a probability model. In this paper we demonstrate how the principal axes of a set of observed data vectors may be determined through maximumlikelihood estimation
Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation
, 2002
"... There are many sources of systematic variation in cDNA microarray experiments which affect the measured gene expression levels (e.g. differences in labeling efficiency between the two fluorescent dyes). The term normalization refers to the process of removing such variation. A constant adjustment is ..."
Abstract

Cited by 699 (9 self)
 Add to MetaCart
is often used to force the distribution of the intensity log ratios to have a median of zero for each slide. However, such global normalization approaches are not adequate in situations where dye biases can depend on spot overall intensity and/or spatial location within the array. This article proposes
Bayesian Analysis of Stochastic Volatility Models
, 1994
"... this article is to develop new methods for inference and prediction in a simple class of stochastic volatility models in which logarithm of conditional volatility follows an autoregressive (AR) times series model. Unlike the autoregressive conditional heteroscedasticity (ARCH) and gener alized ARCH ..."
Abstract

Cited by 588 (25 self)
 Add to MetaCart
ARCH (GARCH) models [see Bollerslev, Chou, and Kroner (1992) for a survey of ARCH modeling], both the mean and logvolatility equations have separate error terms. The ease of evaluating the ARCH likelihood function and the ability of the ARCH specification to accommodate the timevarying volatility
Dynamic conditional correlation: A simple class of multivariate generalized autoregressive conditional heteroskedasticity models
 Journal of Business and Economic Statistics
, 2002
"... Time varying correlations are often estimated with Multivariate Garch models that are linear in squares and cross products of the data. A new class of multivariate models called dynamic conditional correlation (DCC) models is proposed. These have the flexibility of univariate GARCH models coupled wi ..."
Abstract

Cited by 684 (17 self)
 Add to MetaCart
with parsimonious parametric models for the correlations. They are not linear but can often be estimated very simply with univariate or two step methods based on the likelihood function. It is shown that they perform well in a variety of situations and provide sensible empirical results.
Generalized Additive Models
, 1984
"... Likelihood based regression models, such as the normal linear regression model and the linear logistic model, assume a linear (or some other parametric) form for the covariate effects. We introduce the Local Scotinq procedure which replaces the liner form C Xjpj by a sum of smooth functions C Sj(Xj) ..."
Abstract

Cited by 2413 (46 self)
 Add to MetaCart
maximizers of the ezpected loglikelihood, and this makes clear their connection to standard maximum likelihood estimation. A method for estimating the “degrees of freedom” of the procedures is also given.
Results 1  10
of
787,963