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18,667
Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features
, 1983
"... For a successful analysis of the relation between amino acid sequence and protein structure, an unambiguous and physically meaningful definition of secondary structure is essential. We have developed a set of simple and physically motivated criteria for secondary structure, programmed as a pattern-r ..."
Abstract
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Cited by 2096 (5 self)
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for an overall view and strip tables for the details of each of 10,925 residues. The dictionary is also available in computer-readable form for protein structure prediction work.
Protein Secondary Structure Prediction . . .
- JO MOL B/O/. (1999) 292, 195-202 .GG
, 1999
"... ..."
Identification of Prokaryotic and Eukaryotic Signal Peptides and Prediction of Their Cleavage Sites
, 1997
"... We have developed a new method for identification of signal peptides and their cleavage sites based on neural networks trained on separate sets of prokaryotic and eukaryotic sequences. The method performs significantly better than previous prediction schemes, and can easily be applied on genome-wide ..."
Abstract
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Cited by 787 (17 self)
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the protein is translocated through the membrane. The common structure of signal peptides from variou...
The SWISS-MODEL Workspace: A web-based environment for protein structure homology modelling
- BIOINFORMATICS
, 2005
"... Motivation: Homology models of proteins are of great interest for planning and analyzing biological experiments when no experimental three-dimensional structures are available. Building homology models requires specialized programs and up-to-date sequence and structural databases. Integrating all re ..."
Abstract
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Cited by 575 (5 self)
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dedicated to protein structure homology modelling. It assists and guides the user in building protein homology models at different levels of complexity. A personal working environment is provided for each user where several modelling projects can be carried out in parallel. Protein sequence and structure
Cilk: An Efficient Multithreaded Runtime System
, 1995
"... Cilk (pronounced “silk”) is a C-based runtime system for multithreaded parallel programming. In this paper, we document the efficiency of the Cilk work-stealing scheduler, both empirically and analytically. We show that on real and synthetic applications, the “work” and “critical path ” of a Cilk co ..."
Abstract
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Cited by 763 (33 self)
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computation can be used to accurately model performance. Consequently, a Cilk programmer can focus on reducing the work and critical path of his computation, insulated from load balancing and other rtmtime scheduling issues. We also prove that for the class of “fully strict ” (well-structured) programs
Toward a model of text comprehension and production
- Psychological Review
, 1978
"... The semantic structure of texts can be described both at the local microlevel and at a more global macrolevel. A model for text comprehension based on this notion accounts for the formation of a coherent semantic text base in terms of a cyclical process constrained by limitations of working memory. ..."
Abstract
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Cited by 557 (12 self)
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The semantic structure of texts can be described both at the local microlevel and at a more global macrolevel. A model for text comprehension based on this notion accounts for the formation of a coherent semantic text base in terms of a cyclical process constrained by limitations of working memory
Protein structure prediction and structural genomics
- Science
, 2001
"... Genome sequencing projects are producing linear amino acid sequences, but full understanding of the biological role of these proteins will require knowledge of their structure and function. Although experimental structure determination methods are providing high-resolution structure information abou ..."
Abstract
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Cited by 332 (14 self)
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about a subset of the proteins, computational structure prediction methods will provide valuable information for the large fraction of sequences whose structures will not be determined experimentally. The first class of protein structure prediction methods, including threading and comparative modeling
Protein homology detection by HMM-HMM comparison
- BIOINFORMATICS
, 2005
"... Motivation: Protein homology detection and sequence alignment are at the basis of protein structure prediction, function prediction, and evolution. Results: We have generalized the alignment of protein se-quences with a profile hidden Markov model (HMM) to the case of pairwise alignment of profile H ..."
Abstract
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Cited by 401 (8 self)
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Motivation: Protein homology detection and sequence alignment are at the basis of protein structure prediction, function prediction, and evolution. Results: We have generalized the alignment of protein se-quences with a profile hidden Markov model (HMM) to the case of pairwise alignment of profile
What memory is for
, 1997
"... Let’s start from scratch in thinking about what memory is for, and consequently, how it works. Suppose that memory and conceptualization work in the service of perception and action. In this case, conceptualization is the encoding of patterns of possible physical interaction with a three-dimensiona ..."
Abstract
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Cited by 396 (5 self)
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Let’s start from scratch in thinking about what memory is for, and consequently, how it works. Suppose that memory and conceptualization work in the service of perception and action. In this case, conceptualization is the encoding of patterns of possible physical interaction with a three
Results 1 - 10
of
18,667
