the incentive to settle and with the proper disagreement jfoint chosen. The results provide a guide for the application of the Nash bar-gaining solution in economic modelling. 1.

can be divided into regions corresponding to the physio-logical states of nerve fiber (resting, active, refractory, enhanced, depressed, etc.) to form a "physiological state diagram, " with the help of which many physiological phenomena can be summarized. A properly chosen projection from

Artificial Intelligence (DAI) is raised. The thesis presents a testbed populated by simple trusting agents which substantiates the utility of the formalism. The formalism provides a step in the direction of a proper understanding and definition of human trust. A contribution of the thesis is its detailed

We introduce a method of functionally classifying genes by using gene expression data from DNA microarray hybridization experiments. The method is based on the theory of support vector machines (SVMs). SVMs are considered a supervised computer learning method because they exploit prior knowledge of gene function to identify unknown genes of similar function from expression data. SVMs avoid several problems associated with unsupervised clustering methods, such as hierarchical clustering and self-organizing maps. SVMs have many mathematical features that make them attractive for gene expression analysis, including their exibility in choosing a similarity function, sparseness of solution when dealing with large data sets, the ability t...

Currently, computational linguists and cognitive scientists working in the area of discourse and dialogue argue that their subjective judgments are reliable using several different statistics, none of which are easily interpretable or comparable to each other. Meanwhile, researchers in content analysis have already experienced the same difficulties and come up with a solution in the kappa statistic. We discuss what is wrong with reliability measures as they are currently used for discourse and dialogue work in computational linguistics and cognitive science, and argue that we would be better off as a field adopting techniques from content analysis. 1

This paper considers a number of selection schemes commonly used in modern genetic algorithms. Specifically, proportionate reproduction, ranking selection, tournament selection, and Genitor (or «steady state") selection are compared on the basis of solutions to deterministic difference or differential equations, which are verified through computer simulations. The analysis provides convenient approximate or exact solutions as well as useful convergence time and growth ratio estimates. The paper recommends practical application of the analyses and suggests a number of paths for more detailed analytical investigation of selection techniques. Keywords: proportionate selection, ranking selection, tournament selection, Genitor, takeover time, time complexity, growth ratio. 1

The evolutionary history of a set of taxa is usually represented by a phylogenetic tree, and this model has greatly facilitated the discussion and testing of hypotheses. However, it is well known that more complex evolutionary scenarios are poorly described by such models. Further, even when evolution proceeds in a tree-like manner, analysis of the data may not be best served by using methods that enforce a tree structure, but rather by a richer visualization of the data to evaluate its properties, at least as an essential first step. Thus, phylogenetic networks should be employed when reticulate events such as hybridization, horizontal gene transfer, recombination, or gene duplication and-loss are believed to be involved, and, even in the absence of such events, phylogenetic networks have a useful role to play. This paper reviews the terminology used for phylogenetic networks and covers both split networks and reticulate networks, how they are defined and how they can be interpreted. Additionally, the paper outlines the beginnings of a comprehensive statistical framework for applying split network methods. We show how split networks can represent confidence sets of trees and introduce a conservative statistical test for whether the conflicting signal in a network is treelike. Finally, this paper describes a new program SplitsTree4, an interactive and comprehensive tool for inferring different types of phylogenetic networks from sequences, distances and trees.

In a 1935 paper, and in his book Theory of Probability, Jeffreys developed a methodology for quantifying the evidence in favor of a scientific theory. The centerpiece was a number, now called the Bayes factor, which is the posterior odds of the null hypothesis when the prior probability on the null is one-half. Although there has been much discussion of Bayesian hypothesis testing in the context of criticism of P -values, less attention has been given to the Bayes factor as a practical tool of applied statistics. In this paper we review and discuss the uses of Bayes factors in the context of five scientific applications in genetics, sports, ecology, sociology and psychology.

We review the literature on semi-supervised learning, which is an area in machine learning and more generally, artificial intelligence. There has been a whole spectrum of interesting ideas on how to learn from both labeled and unlabeled data, i.e. semi-supervised learning. This document is a chapter excerpt from the author’s doctoral thesis (Zhu, 2005). However the author plans to update the online version frequently to incorporate the latest development in the field. Please obtain the latest version at http://www.cs.wisc.edu/~jerryzhu/pub/ssl_survey.pdf

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