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21,055
Improved prediction of signal peptides -- SignalP 3.0
- J. MOL. BIOL.
, 2004
"... We describe improvements of the currently most popular method for prediction of classically secreted proteins, SignalP. SignalP consists of two different predictors based on neural network and hidden Markov model algorithms, where both components have been updated. Motivated by the idea that the cle ..."
Abstract
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Cited by 654 (7 self)
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We describe improvements of the currently most popular method for prediction of classically secreted proteins, SignalP. SignalP consists of two different predictors based on neural network and hidden Markov model algorithms, where both components have been updated. Motivated by the idea
Convergence Properties of the Nelder-Mead Simplex Method in Low Dimensions
- SIAM Journal of Optimization
, 1998
"... Abstract. The Nelder–Mead simplex algorithm, first published in 1965, is an enormously popular direct search method for multidimensional unconstrained minimization. Despite its widespread use, essentially no theoretical results have been proved explicitly for the Nelder–Mead algorithm. This paper pr ..."
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Cited by 598 (3 self)
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Abstract. The Nelder–Mead simplex algorithm, first published in 1965, is an enormously popular direct search method for multidimensional unconstrained minimization. Despite its widespread use, essentially no theoretical results have been proved explicitly for the Nelder–Mead algorithm. This paper
The R*-tree: an efficient and robust access method for points and rectangles
- INTERNATIONAL CONFERENCE ON MANAGEMENT OF DATA
, 1990
"... The R-tree, one of the most popular access methods for rectangles, is based on the heuristic optimization of the area of the enclosing rectangle in each inner node. By running numerous experiments in a standardized testbed under highly varying data, queries and operations, we were able to design the ..."
Abstract
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Cited by 1262 (74 self)
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The R-tree, one of the most popular access methods for rectangles, is based on the heuristic optimization of the area of the enclosing rectangle in each inner node. By running numerous experiments in a standardized testbed under highly varying data, queries and operations, we were able to design
TABU SEARCH
"... Tabu Search is a metaheuristic that guides a local heuristic search procedure to explore the solution space beyond local optimality. One of the main components of tabu search is its use of adaptive memory, which creates a more flexible search behavior. Memory based strategies are therefore the hallm ..."
Abstract
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Cited by 822 (48 self)
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. These networks have been widely used for both prediction and classification in many different areas. Although the most popular method for training these networks is backpropagation, other optimization methods such as tabu search have been applied to solve this problem. This chapter describes two training
Quantization Index Modulation: A Class of Provably Good Methods for Digital Watermarking and Information Embedding
- IEEE TRANS. ON INFORMATION THEORY
, 1999
"... We consider the problem of embedding one signal (e.g., a digital watermark), within another "host" signal to form a third, "composite" signal. The embedding is designed to achieve efficient tradeoffs among the three conflicting goals of maximizing information-embedding rate, mini ..."
Abstract
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Cited by 496 (14 self)
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distortion--robustness tradeoffs than currently popular spread-spectrum and low-bit(s) modulation methods. Furthermore, we show that for some important classes of probabilistic models, DC-QIM is optimal (capacity-achieving) and regular QIM is near-optimal. These include both additive white Gaussian noise
A tutorial on hidden Markov models and selected applications in speech recognition
- PROCEEDINGS OF THE IEEE
, 1989
"... Although initially introduced and studied in the late 1960s and early 1970s, statistical methods of Markov source or hidden Markov modeling have become increasingly popular in the last several years. There are two strong reasons why this has occurred. First the models are very rich in mathematical s ..."
Abstract
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Cited by 5892 (1 self)
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Although initially introduced and studied in the late 1960s and early 1970s, statistical methods of Markov source or hidden Markov modeling have become increasingly popular in the last several years. There are two strong reasons why this has occurred. First the models are very rich in mathematical
From Few to many: Illumination cone models for face recognition under variable lighting and pose
- IEEE Transactions on Pattern Analysis and Machine Intelligence
, 2001
"... We present a generative appearance-based method for recognizing human faces under variation in lighting and viewpoint. Our method exploits the fact that the set of images of an object in fixed pose, but under all possible illumination conditions, is a convex cone in the space of images. Using a smal ..."
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Cited by 754 (12 self)
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on the most extreme lighting directions, and significantly outperforms popular recognition methods that do not use a generative model.
A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood
, 2003
"... The increase in the number of large data sets and the complexity of current probabilistic sequence evolution models necessitates fast and reliable phylogeny reconstruction methods. We describe a new approach, based on the maximumlikelihood principle, which clearly satisfies these requirements. The ..."
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Cited by 2182 (27 self)
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of 500 rbcL sequences with 1,428 base pairs from plant plastids, thus reaching a speed of the same order as some popular distance-based and parsimony algorithms. This new method is implemented in the PHYML program, which is freely available on our web page:
Consistency of spectral clustering
, 2004
"... Consistency is a key property of statistical algorithms, when the data is drawn from some underlying probability distribution. Surprisingly, despite decades of work, little is known about consistency of most clustering algorithms. In this paper we investigate consistency of a popular family of spe ..."
Abstract
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Cited by 572 (15 self)
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Consistency is a key property of statistical algorithms, when the data is drawn from some underlying probability distribution. Surprisingly, despite decades of work, little is known about consistency of most clustering algorithms. In this paper we investigate consistency of a popular family
Reducing Multiclass to Binary: A Unifying Approach for Margin Classifiers
- JOURNAL OF MACHINE LEARNING RESEARCH
, 2000
"... We present a unifying framework for studying the solution of multiclass categorization problems by reducing them to multiple binary problems that are then solved using a margin-based binary learning algorithm. The proposed framework unifies some of the most popular approaches in which each class ..."
Abstract
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Cited by 561 (20 self)
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We present a unifying framework for studying the solution of multiclass categorization problems by reducing them to multiple binary problems that are then solved using a margin-based binary learning algorithm. The proposed framework unifies some of the most popular approaches in which each class
Results 1 - 10
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21,055
