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Parsimony analysis of coevolving species associations
- Tangled Trees: Phylogeny, Cospeciation and Coevolution, chapter 2
, 2002
"... Parsimony analysis of host-parasite associations is based on coevolutionary models specifying relevant events, and costs associated with each of these events. Several alternative models and cost assignments have been proposed but the relations between them and other conceivable models and cost assig ..."
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Cited by 27 (2 self)
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Parsimony analysis of host-parasite associations is based on coevolutionary models specifying relevant events, and costs associated with each of these events. Several alternative models and cost assignments have been proposed but the relations between them and other conceivable models and cost
PAUP*: Phylogenetic Analysis Using Parsimony (and other methods) 4.0.b5
, 2001
"... This documentation is currently under construction, therefore, we cannot guarantee the accuracy of the information described herein. A much more user-friendly manual is in progress. Revisions will be made available to registered users over the World Wide Web at ..."
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Cited by 5090 (6 self)
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This documentation is currently under construction, therefore, we cannot guarantee the accuracy of the information described herein. A much more user-friendly manual is in progress. Revisions will be made available to registered users over the World Wide Web at
Mega: molecular evolutionary genetic analysis software for microcomputers
- CABIOS
, 1994
"... A computer program package called MEGA has been developed for estimating evolutionary distances, reconstructing phylogenetic trees and computing basic statistical quantities from molecular data. It is written in C+ + and is intended to be used on IBM and IBM-compatible personal computers. In this pr ..."
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Cited by 505 (10 self)
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. In this program, various methods for estimating evolutionary distances from nucleotide and amino acid sequence data, three different methods of phylogenetic inference (UPGMA, neighbor-joining and maximum parsimony) and two statistical tests of topological differences are included. For the maximum parsimony method
Assessment of the accuracy of matrix representation with parsimony analysis supertree construction
, 2001
"... Despite the growing popularity of supertree construction for combining phylogenetic in-formation to produce more inclusive phylogenies, large-scale performance testing of this method has not been done. Through simulation, we tested the accuracy of the most widely used supertree method, matrix repre ..."
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Cited by 40 (5 self)
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representation with parsimony analysis (MRP), with respect to a (maximum parsi-mony) total evidence solution and a known model tree. When source trees overlap completely, MRP provided a reasonable approximation of the total evidence tree; agreement was usually>85%. Per-formance improved slightly when using
Large-Scale Parsimony Analysis of Metazoan Indels in Protein- Coding Genes
"... Insertions and deletions (indels) are considered to be rare evolutionary events, the analysis of which may resolve controversial phylogenetic relationships. Indeed, indel characters are often assumed to be less homoplastic than amino acid and nucleotide substitutions and, consequently, more reliable ..."
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Insertions and deletions (indels) are considered to be rare evolutionary events, the analysis of which may resolve controversial phylogenetic relationships. Indeed, indel characters are often assumed to be less homoplastic than amino acid and nucleotide substitutions and, consequently, more
Parsimony Analysis – a Novel Method of Structured Knowledge Representation for Teaching Computer Science
"... Knowledge may be structured in a manner that may either handicap or improve learning outcomes. Knowledge construction is therefore an important aspect of the learning and assessment process. This paper is primarily concerned with structural knowledge (knowing how) of which there are numerous represe ..."
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representations and mapping methods each with their associated strengths and weaknesses. This paper presents the novel application of parsimony analysis for organizing and defining structural knowledge within the field of computer science. Work to date has clearly demonstrated there are considerable potential
Use of Parsimony Analysis to Identify Areas of Endemism of Chinese Birds: Implications for Conservation and Biogeography
, 2010
"... Abstract: Parsimony analysis of endemicity (PAE) was used to identify areas of endemism (AOEs) for Chinese birds at the subregional level. Four AOEs were identified based on a distribution database of 105 endemic species and using 18 avifaunal subregions as the operating geographical units (OGUs). T ..."
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Abstract: Parsimony analysis of endemicity (PAE) was used to identify areas of endemism (AOEs) for Chinese birds at the subregional level. Four AOEs were identified based on a distribution database of 105 endemic species and using 18 avifaunal subregions as the operating geographical units (OGUs
Historical relationships of the Mexican cloud forests: a preliminary vicariance model applying Parsimony Analysis of Endemicity to vascular plant taxa
"... Abstract Mexican cloud forests, situated between 600 and 3000 m of elevation, exhibit a remarkable high biotic diversity. They follow a fragmented pattern, similar to that of an archipelago, that makes them suitable to vicariance modelling. A Parsimony Analysis of Endemicity (PAE) was applied to th ..."
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Abstract Mexican cloud forests, situated between 600 and 3000 m of elevation, exhibit a remarkable high biotic diversity. They follow a fragmented pattern, similar to that of an archipelago, that makes them suitable to vicariance modelling. A Parsimony Analysis of Endemicity (PAE) was applied
On Divide-and-Conquer Strategies for Parsimony Analysis of Large Data Sets: Rec-I-DCM3 versus TNT
"... Abstract.—Roshan et al. recently described a "divide-and-conquer " technique for parsimony analysis of large data sets, Rec-I-DCM3, and stated that it compares very favorably to results using the program TNT. Their technique is based on selecting subsets of taxa to create reduced data sets ..."
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Cited by 2 (0 self)
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Abstract.—Roshan et al. recently described a "divide-and-conquer " technique for parsimony analysis of large data sets, Rec-I-DCM3, and stated that it compares very favorably to results using the program TNT. Their technique is based on selecting subsets of taxa to create reduced data
Results 1 - 10
of
1,532
