"... In PAGE 6: ...We have identified 26 false negative cases (score = 4), which are listed in Table4 . Some of the most interesting assignments here correspond to genes CT071 (a reductoi- somerase involved in terpenoid biosynthesis) (Takahashi et al.... In PAGE 6: ... Some of the most interesting assignments here correspond to genes CT071 (a reductoi- somerase involved in terpenoid biosynthesis) (Takahashi et al., 1998), CT257 (a CBS domain-containing pro- tein), CT356 (a thioredoxin domain-containing protein), CT359 (a biotin synthesis protein BioY homolog), CT473 (an alpha-hemolysin homolog), CT627 (a rhodanese domain-containing protein), CT650 (RecA), CT700 (a TPR domain-containing protein) and CT718 (Flagellar assembly protein FliH) ( Table4 ). In addition, we report a second RsbU-like protein (CT589), adjacent to the one that has been detected originally (CT588) (Stephens et al.... ..."

"... In PAGE 5: ...us repeats unmasked (Fig. 4). There is some circularity in this measure of success (because PALS generates the input to PILER), and in general the number of masked bases is a ques- tionable measure of a repeat library as functional elements such as paralogs may be false-positive masked. However, we believe that in this case, the observed increase in masking is a strong indication of improved quality [see entries (1) and (2) of Table1 , for examples of novel elements found in this analysis]. 3.... ..."

"... In PAGE 6: ... We also observe interactions of two ribosomal proteins, RPS0A and RPS0B, with APG17, a protein involved in vesicu- lar transport and autophagy. However, because pairwise in- teractions do not give a complete functional role of a protein, we looked at all interactions of APG17 and RPS0A separately in Table5 and Table 6. We observe RPS0A interactions with APG17, BBP1, YDL100C, and ILV1 with probability greater than 0.... In PAGE 6: ... Thus, binding of two different vesicular transport proteins to ribosomal proteins may or may not be part of one complex, depending on cellular environ- ment. We predict several interactions for APG17 listed in Table5 . We predict nine ORFs of unknown function to have interaction with APG17.... ..."

"... In PAGE 6: ... We also observe interactions of two ribosomal proteins, RPS0A and RPS0B, with APG17, a protein involved in vesicu- lar transport and autophagy. However, because pairwise in- teractions do not give a complete functional role of a protein, we looked at all interactions of APG17 and RPS0A separately in Table 5 and Table6 . We observe RPS0A interactions with APG17, BBP1, YDL100C, and ILV1 with probability greater than 0.... ..."

"... In PAGE 5: ...geneonto- logy.org)( Table3 ). The terms were related with each step of angiogenic processes.... ..."

"... In PAGE 5: ... However, this approach becomes inefficient and impractical when the consen- sus motif is short and the similarity among homolo- gous genes is low. In contrast, computation ap- proaches allow the scanning of similarity along the entire length of candidate genes, based on conserva- tion in stretches of primary sequences or in the pre- sumptive secondary structure ( Table3 ). The confi- dence on sequence matches among remote homologs could gradually be optimized by focusing on comparison in regions corresponding to active sites or functional motifs that are most likely to be shared among divergent members.... ..."

"... In PAGE 15: ...ignal being estimated. The right side of Figure 5 shows the variance of the linear estimator (top) vs. the variance of the novel wavelet estimator (bottom), as a function of number of frames averaged. The numerical results corresponding to Figures 5 are in Table5 -1. The linear averaging and wavelet denoised variances were calculated and compared, as were the SNRs for the two approaches.... In PAGE 17: ... We also note from this figure that the CSTD algorithm results in reconstructed wave shapes with significantly better fidelity to the noise-free AMRL template than those obtained by simply averaging 256 frames. SNR improvements of the CSTD result versus linear averaging are listed in Table5 -2 for averages of 256 and 512 frames. Again, we can easily verify that linear averaging improves the SNR by the predictable amount given by Equation 3.... In PAGE 17: ...3. Table5 -2 Comparison of linear averaging to CSTD denoising for 256 and 512 AMLR 512 data frames Frames SNR noisy signal Linear SNR (dB) Denoise SNR (dB) SNR dB Improvement 256 -15 9.2 14.... In PAGE 18: ... We can see that the variance of this wavelet denoising algorithm is reduced substantially relative to linear averaging. Table5 -3 summarizes the results for these waveforms. Table 5-3 Denoised signal root-mean-square error (rms; i.... In PAGE 18: ... Table 5-3 summarizes the results for these waveforms. Table5 -3 Denoised signal root-mean-square error (rms; i.e.... ..."

"... In PAGE 13: ... Depending on the gesture commands are sent to the devices and feedback is applied. The correlation of gestures and commands is shown in Table3 . If the dialogue nishes by time out or by the pointing gesture or a certain termination gesture the control ow enters the direction determination (Figure 12).... In PAGE 30: ...evice at a time. First a device is selected by the unique pointer click. Depending on the selected device, the gesture will execute a certain command. Table3 shows a possible mapping. The stars indicate that the device in that column supports the function of the row.... ..."

"... In PAGE 2: ... 1). Further control is ac- cording to Table1 , where one gesture is used for each line. Every gesture is mapped to several similar tasks from di erent devices2, which reduces the number of gestures and makes the dialogue more intuitive.... ..."