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147,082
A greedy algorithm for aligning DNA sequences
 J. COMPUT. BIOL
, 2000
"... For aligning DNA sequences that differ only by sequencing errors, or by equivalent errors from other sources, a greedy algorithm can be much faster than traditional dynamic programming approaches and yet produce an alignment that is guaranteed to be theoretically optimal. We introduce a new greedy a ..."
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Cited by 585 (16 self)
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For aligning DNA sequences that differ only by sequencing errors, or by equivalent errors from other sources, a greedy algorithm can be much faster than traditional dynamic programming approaches and yet produce an alignment that is guaranteed to be theoretically optimal. We introduce a new greedy
GPSR: Greedy perimeter stateless routing for wireless networks
 MOBICOM
, 2000
"... We present Greedy Perimeter Stateless Routing (GPSR), a novel routing protocol for wireless datagram networks that uses the positions of touters and a packer's destination to make packet forwarding decisions. GPSR makes greedy forwarding decisions using only information about a router's i ..."
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Cited by 2290 (8 self)
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's immediate neighbors in the network topology. When a packet reaches a region where greedy forwarding is impossible, the algorithm recovers by routing around the perimeter of the region. By keeping state only about the local topology, GPSR scales better in perrouter state than shortestpath and ad
Muscle: multiple sequence alignment with high accuracy and high throughput
 NUCLEIC ACIDS RES
, 2004
"... We describe MUSCLE, a new computer program for creating multiple alignments of protein sequences. Elements of the algorithm include fast distance estimation using kmer counting, progressive alignment using a new profile function we call the logexpectation score, and refinement using treedependent r ..."
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Cited by 2509 (7 self)
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We describe MUSCLE, a new computer program for creating multiple alignments of protein sequences. Elements of the algorithm include fast distance estimation using kmer counting, progressive alignment using a new profile function we call the logexpectation score, and refinement using tree
Efficient Variants of the ICP Algorithm
 INTERNATIONAL CONFERENCE ON 3D DIGITAL IMAGING AND MODELING
, 2001
"... The ICP (Iterative Closest Point) algorithm is widely used for geometric alignment of threedimensional models when an initial estimate of the relative pose is known. Many variants of ICP have been proposed, affecting all phases of the algorithm from the selection and matching of points to the minim ..."
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Cited by 718 (5 self)
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The ICP (Iterative Closest Point) algorithm is widely used for geometric alignment of threedimensional models when an initial estimate of the relative pose is known. Many variants of ICP have been proposed, affecting all phases of the algorithm from the selection and matching of points
Greed is Good: Algorithmic Results for Sparse Approximation
, 2004
"... This article presents new results on using a greedy algorithm, orthogonal matching pursuit (OMP), to solve the sparse approximation problem over redundant dictionaries. It provides a sufficient condition under which both OMP and Donoho’s basis pursuit (BP) paradigm can recover the optimal representa ..."
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Cited by 916 (9 self)
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This article presents new results on using a greedy algorithm, orthogonal matching pursuit (OMP), to solve the sparse approximation problem over redundant dictionaries. It provides a sufficient condition under which both OMP and Donoho’s basis pursuit (BP) paradigm can recover the optimal
Gapped BLAST and PSIBLAST: a new generation of protein database search programs.
 Nucleic Acids Res.
, 1997
"... ABSTRACT The BLAST programs are widely used tools for searching protein and DNA databases for sequence similarities. For protein comparisons, a variety of definitional, algorithmic and statistical refinements described here permits the execution time of the BLAST programs to be decreased substantia ..."
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Cited by 8572 (88 self)
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substantially while enhancing their sensitivity to weak similarities. A new criterion for triggering the extension of word hits, combined with a new heuristic for generating gapped alignments, yields a gapped BLAST program that runs at approximately three times the speed of the original. In addition, a method
Signal recovery from random measurements via Orthogonal Matching Pursuit
 IEEE TRANS. INFORM. THEORY
, 2007
"... This technical report demonstrates theoretically and empirically that a greedy algorithm called Orthogonal Matching Pursuit (OMP) can reliably recover a signal with m nonzero entries in dimension d given O(m ln d) random linear measurements of that signal. This is a massive improvement over previous ..."
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Cited by 802 (9 self)
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This technical report demonstrates theoretically and empirically that a greedy algorithm called Orthogonal Matching Pursuit (OMP) can reliably recover a signal with m nonzero entries in dimension d given O(m ln d) random linear measurements of that signal. This is a massive improvement over
Statistical phrasebased translation
, 2003
"... We propose a new phrasebased translation model and decoding algorithm that enables us to evaluate and compare several, previously proposed phrasebased translation models. Within our framework, we carry out a large number of experiments to understand better and explain why phrasebased models outpe ..."
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Cited by 944 (11 self)
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We propose a new phrasebased translation model and decoding algorithm that enables us to evaluate and compare several, previously proposed phrasebased translation models. Within our framework, we carry out a large number of experiments to understand better and explain why phrasebased models
FAST VOLUME RENDERING USING A SHEARWARP FACTORIZATION OF THE VIEWING TRANSFORMATION
, 1995
"... Volume rendering is a technique for visualizing 3D arrays of sampled data. It has applications in areas such as medical imaging and scientific visualization, but its use has been limited by its high computational expense. Early implementations of volume rendering used bruteforce techniques that req ..."
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Cited by 542 (2 self)
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casting algorithms because the latter must perform analytic geometry calculations (e.g. intersecting rays with axisaligned boxes). The new scanlineorder algorithm simply streams through the volume and the image in storage order. We describe variants of the algorithm for both parallel and perspective
Least angle regression
, 2004
"... The purpose of model selection algorithms such as All Subsets, Forward Selection and Backward Elimination is to choose a linear model on the basis of the same set of data to which the model will be applied. Typically we have available a large collection of possible covariates from which we hope to s ..."
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Cited by 1326 (37 self)
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to select a parsimonious set for the efficient prediction of a response variable. Least Angle Regression (LARS), a new model selection algorithm, is a useful and less greedy version of traditional forward selection methods. Three main properties are derived: (1) A simple modification of the LARS algorithm
Results 1  10
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147,082