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MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

by Kazutaka Katoh, Daron M. St , 2013
"... We report a major update of the MAFFT multiple sequence alignment program. This version has several new features, including options for adding unaligned sequences into an existing alignment, adjustment of direction in nucleotide alignment, constrained alignment and parallel processing, which were im ..."
Abstract - Cited by 280 (4 self) - Add to MetaCart
implemented after the previous major update. This report shows actual examples to explain how these features work, alone and in combination. Some examples incorrectly aligned by MAFFT are also shown to clarify its limitations. We discuss how to avoid misalignments, and our ongoing efforts to overcome

Accelerator Structure Misalignments at the SLC

by F. -j. Decker, R. Assmann, M. G. Minty, P. Raimondi, G. Stupakov, F. -j. Decker, R. Assmann, M. G. Minty, P. Raimondi, G. Stupakov , 1998
"... Transverse wakefield kicks from misaligned accelerating structures in the SLC linac contribute significantly to emittance growth. If these kicks could be measured directly, it would be possible to align and/or steer the beam to a kick-free trajectory. In the Accelerator Structure Test Facility at SL ..."
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Transverse wakefield kicks from misaligned accelerating structures in the SLC linac contribute significantly to emittance growth. If these kicks could be measured directly, it would be possible to align and/or steer the beam to a kick-free trajectory. In the Accelerator Structure Test Facility

Statistical Modelling Of Epipolar Misalignment

by Ingemar J. Cox, Sébastien Roy , 1995
"... We investigate whether epipolar misalignment can be automatically detected and corrected without explicit knowledge of point correspondences. In this regard, the work is closely related to the problem of structure-and-motion from two frames. However, the motion estimation described here is independe ..."
Abstract - Cited by 2 (1 self) - Add to MetaCart
We investigate whether epipolar misalignment can be automatically detected and corrected without explicit knowledge of point correspondences. In this regard, the work is closely related to the problem of structure-and-motion from two frames. However, the motion estimation described here

Misalignments in a Linear Accelerator Structure

by Karl L. F. Bane, Zenghai Li, Karl L. F. Bane, Zenghai Li , 2000
"... We are interested in obtaining the long-range, dipole wakefield of a linac structure with internal misalignments. The NLC linac structure is composed of a collection of cups that are brazed together, and such a calculation, for example, is important in setting the straightness tolerance for the comp ..."
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We are interested in obtaining the long-range, dipole wakefield of a linac structure with internal misalignments. The NLC linac structure is composed of a collection of cups that are brazed together, and such a calculation, for example, is important in setting the straightness tolerance

The misalignment of product architecture and organizational structure in complex product development.

by Manuel E Sosa , Steven D Eppinger - Management Science, , 2004
"... ..."
Abstract - Cited by 78 (0 self) - Add to MetaCart
Abstract not found

Eliminating structure and intensity misalignment in image stitching

by Jiaya Jia, Chi-keung Tang - In Proc. ICCV , 2005
"... The aim of this paper is to achieve seamless image stitching for eliminating obvious visual artifact caused by severe intensity discrepancy, image distortion and structure misalignment, given that the input images are globally registered. Our approach is based on structure deformation and propagatio ..."
Abstract - Cited by 12 (2 self) - Add to MetaCart
The aim of this paper is to achieve seamless image stitching for eliminating obvious visual artifact caused by severe intensity discrepancy, image distortion and structure misalignment, given that the input images are globally registered. Our approach is based on structure deformation

Effects of Alternating Cell Misalignments on the DDS

by R. M. Jones Et Al, T. Higo , 1998
"... We study some effects of cell misalignments in accelerator structures in which each cell is displaced the same amount and direction but with sign which alternates from cell to cell. In particular we study the manifold radiation in a damped detuned structure (DDS1) and wakefield effects in a uniform ..."
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We study some effects of cell misalignments in accelerator structures in which each cell is displaced the same amount and direction but with sign which alternates from cell to cell. In particular we study the manifold radiation in a damped detuned structure (DDS1) and wakefield effects in a uniform

Measuring Exchange Rate Misalignment in Turkey ∗

by Ümit Özlale, Erinç Yeldan , 2002
"... We propose a new methodology to measure exchange rate misalignment for Turkey, which has already undergone a severe economic crisis. We estimate the real exchange rate within a time varying parameter model, where a return-to-normality assumption about the parameters are assumed. Contrary to common b ..."
Abstract - Cited by 1 (0 self) - Add to MetaCart
We propose a new methodology to measure exchange rate misalignment for Turkey, which has already undergone a severe economic crisis. We estimate the real exchange rate within a time varying parameter model, where a return-to-normality assumption about the parameters are assumed. Contrary to common

Linear Logic Based Transfer and Structural Misalignment

by Dick Crouch, Anette Frank, Josef van Genabith , 2001
"... [van Genabith et al., 1998] described an approach to ambiguity preserving machine translation, where transfer takes place on the glue language meaning constructors of [Dalrymple et al., 1996]. Unfortunately, it did not deal with structural misalignment problems, such as embedded head switching, ..."
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[van Genabith et al., 1998] described an approach to ambiguity preserving machine translation, where transfer takes place on the glue language meaning constructors of [Dalrymple et al., 1996]. Unfortunately, it did not deal with structural misalignment problems, such as embedded head switching

Technology Adaptation: The Case Of A Computer-Supported Inter-Organizational Virtual Team

by Ann Majchrzak, Ronald E. Rice, Arvind Malhotra, Nelson King, Sulin Ba , 2000
"... The adaptation process for new technology is not yet well understood. This study analyzes how an inter-organizational virtual team, tasked with creating a highly innovative product over a 10 month period, adapted the use of a collaborative technology and successfully achieved its challenging objecti ..."
Abstract - Cited by 190 (7 self) - Add to MetaCart
, electronic log files, interviews, and weekly questionnaires administered to team members. We found that the team initially experienced significant misalignments among the pre-existing organizational environment, group, and technology structures. To resolve these misalignments, the team modified
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