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Classification of MEDLINE Abstracts
"... This paper provides the preliminary result in our experiments to automatically assign MeSH terms to MEDLINE abstracts. Every year about 100,000 documents are added to MEDLINE, index terms are assigned by hand to each document from a controlled vocabulary called MeSH. This is necessarily time consumi ..."
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This paper provides the preliminary result in our experiments to automatically assign MeSH terms to MEDLINE abstracts. Every year about 100,000 documents are added to MEDLINE, index terms are assigned by hand to each document from a controlled vocabulary called MeSH. This is necessarily time
Mining Medline: Abstracts, Sentences, Or Phrases?
, 2002
"... Sentence pair Sentence Phrase w--} w>0.511 - 0.339<w<0.510 w<0.338 5 Discussion and Conclusion In view of the results reported here it is not surprising that researchers have reported interesting results for text mining in MEDLINE based on abstracts, sentences, and phrases. Tables 2 a ..."
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Cited by 70 (3 self)
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Sentence pair Sentence Phrase w--} w>0.511 - 0.339<w<0.510 w<0.338 5 Discussion and Conclusion In view of the results reported here it is not surprising that researchers have reported interesting results for text mining in MEDLINE based on abstracts, sentences, and phrases. Tables 2
A Study of Abbreviations in MEDLINE Abstracts
, 2002
"... Abbreviations are widely used in writing, and the understanding of abbreviations is important for natural language processing applications. Abbreviations are not always defined in a document and they are highly ambiguous. A knowledge base that consists of abbreviations with their associated senses ..."
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and a method to resolve the ambiguities are needed. In this paper, we studied the UMLS coverage, textual variants of senses, and the ambiguity of abbreviations in MEDLINE abstracts.
Automatically linking medline abstracts to the geneontology
- In Proc. of Bio-Ontologies Meeting
, 2003
"... Much has been written recently about the need for effec-tive tools and methods for mining the wealth of informa- ..."
Abstract
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Cited by 5 (0 self)
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Much has been written recently about the need for effec-tive tools and methods for mining the wealth of informa-
MINING MEDLINE: ABSTRACTS, SENTENCES, OR PHRASES?
"... A growing body of work addresses automated mining for biochemical information from digital repositories of scientific literature such as MEDLINE. Some of this work uses abstracts as the unit of text from which to extract facts. Other work uses sentences for this purpose, while still other work uses ..."
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A growing body of work addresses automated mining for biochemical information from digital repositories of scientific literature such as MEDLINE. Some of this work uses abstracts as the unit of text from which to extract facts. Other work uses sentences for this purpose, while still other work uses
Recognizing gene and protein function in MEDLINE abstracts
- in “Proc. Text Retrieval Conference (TREC)”, NIST—National Institute of Standards and Technology, National Institute of Standards and Technology (NIST
, 2003
"... Identification of genes and proteins that affect biological function in humans and other organisms is a critical step in the discovery of new medicinal therapies. Automatic recognition of MEDLINE abstracts that describe gene/protein function would be of tremendous benefit to researchers in industry, ..."
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Cited by 1 (0 self)
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Identification of genes and proteins that affect biological function in humans and other organisms is a critical step in the discovery of new medicinal therapies. Automatic recognition of MEDLINE abstracts that describe gene/protein function would be of tremendous benefit to researchers in industry
Learning to Extract Proteins and their Interactions from Medline Abstracts
- In: ICML-2003 Workshop on Machine Learning in Bioinformatics. (2003
, 2003
"... We present results from a variety of learned information extraction systems for identifying human protein names in Medline abstracts and subsequently extracting interactions between the proteins. We demonstrate that machine learning approaches using support vector machines and hidden Markov m ..."
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Cited by 13 (1 self)
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We present results from a variety of learned information extraction systems for identifying human protein names in Medline abstracts and subsequently extracting interactions between the proteins. We demonstrate that machine learning approaches using support vector machines and hidden Markov
Detecting Gene Relations from Medline Abstracts
- Pac. Symp. Biocomput
, 2001
"... this article, we present a simple analysis and knowledge discovery ..."
Abstract
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Cited by 58 (1 self)
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this article, we present a simple analysis and knowledge discovery
Gene clustering by latent semantic indexing of Medline abstracts
- Bioinformatics
"... Motivation: A major challenge in the interpretation of high-throughput genomic data is understanding the functional asso-ciations between genes. Previously, several approaches have been described to extract gene relationships from various bio-logical databases using term-matching methods. However, m ..."
Abstract
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Cited by 53 (8 self)
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conceptual gene relationships from titles and abstracts in MEDLINE citations. Results: We found that LSI identified gene-to-gene and keyword-to-gene relationships with high average precision. In addition, LSI identified implicit gene relationships based on word usage patterns in the gene abstract documents
Automatically Identifying Gene/Protein Terms in MEDLINE Abstracts
- Journal of Biomedical Informatics
, 2002
"... Motivation. Natural language processing (NLP) techniques are used to extract informationautomatically from computerreadable literature. ..."
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Cited by 10 (0 self)
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Motivation. Natural language processing (NLP) techniques are used to extract informationautomatically from computerreadable literature.
Results 1 - 10
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1,648