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924,152
Modeling and simulation of genetic regulatory systems: A literature review
 JOURNAL OF COMPUTATIONAL BIOLOGY
, 2002
"... In order to understand the functioning of organisms on the molecular level, we need to know which genes are expressed, when and where in the organism, and to which extent. The regulation of gene expression is achieved through genetic regulatory systems structured by networks of interactions between ..."
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Cited by 729 (15 self)
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for the modeling and simulation of genetic regulatory networks will be indispensable. This paper reviews formalisms that have been employed in mathematical biology and bioinformatics to describe genetic regulatory systems, in particular directed graphs, Bayesian networks, Boolean networks and their generalizations
A theory of communicating sequential processes
, 1984
"... A mathematical model for communicating sequential processes is given, and a number of its interesting and useful properties are stated and proved. The possibilities of nondetermimsm are fully taken into account. ..."
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Cited by 4135 (17 self)
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A mathematical model for communicating sequential processes is given, and a number of its interesting and useful properties are stated and proved. The possibilities of nondetermimsm are fully taken into account.
SeibergWitten prepotential from instanton counting
, 2002
"... In my lecture I consider integrals over moduli spaces of supersymmetric gauge field configurations (instantons, Higgs bundles, torsion free sheaves). The applications are twofold: physical and mathematical; they involve supersymmetric quantum mechanics of Dparticles in various dimensions, direct co ..."
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Cited by 496 (9 self)
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In my lecture I consider integrals over moduli spaces of supersymmetric gauge field configurations (instantons, Higgs bundles, torsion free sheaves). The applications are twofold: physical and mathematical; they involve supersymmetric quantum mechanics of Dparticles in various dimensions, direct
The Geometry of Dissipative Evolution Equations: The Porous Medium Equation
"... We show that the porous medium equation has a gradient flow structure which is both physically and mathematically natural. In order to convince the reader that it is mathematically natural, we show the time asymptotic behavior can be easily understood in this framework. We use the intuition and the ..."
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Cited by 413 (11 self)
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We show that the porous medium equation has a gradient flow structure which is both physically and mathematically natural. In order to convince the reader that it is mathematically natural, we show the time asymptotic behavior can be easily understood in this framework. We use the intuition
Convex Analysis
, 1970
"... In this book we aim to present, in a unified framework, a broad spectrum of mathematical theory that has grown in connection with the study of problems of optimization, equilibrium, control, and stability of linear and nonlinear systems. The title Variational Analysis reflects this breadth. For a lo ..."
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Cited by 5350 (67 self)
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In this book we aim to present, in a unified framework, a broad spectrum of mathematical theory that has grown in connection with the study of problems of optimization, equilibrium, control, and stability of linear and nonlinear systems. The title Variational Analysis reflects this breadth. For a
A gentle tutorial on the EM algorithm and its application to parameter estimation for gaussian mixture and hidden markov models
, 1997
"... We describe the maximumlikelihood parameter estimation problem and how the Expectationform of the EM algorithm as it is often given in the literature. We then develop the EM parameter estimation procedure for two applications: 1) finding the parameters of a mixture of Gaussian densities, and 2) fi ..."
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Cited by 678 (4 self)
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) finding the parameters of a hidden Markov model (HMM) (i.e., the BaumWelch algorithm) for both discrete and Gaussian mixture observation models. We derive the update equations in fairly explicit detail but we do not prove any convergence properties. We try to emphasize intuition rather than mathematical
Fronts propagating with curvature dependent speed: algorithms based on Hamiltonâ€“Jacobi formulations
 Journal of Computational Physics
, 1988
"... We devise new numerical algorithms, called PSC algorithms, for following fronts propagating with curvaturedependent speed. The speed may be an arbitrary function of curvature, and the front can also be passively advected by an underlying flow. These algorithms approximate the equations of motion, w ..."
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Cited by 1183 (64 self)
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We devise new numerical algorithms, called PSC algorithms, for following fronts propagating with curvaturedependent speed. The speed may be an arbitrary function of curvature, and the front can also be passively advected by an underlying flow. These algorithms approximate the equations of motion
A Simple Model of Capital Market Equilibrium with Incomplete Information
 JOURNAL OF FINANCE
, 1987
"... The sphere of modern financial economics encompases finance, micro investment theory and much of the economics of uncertainty. As is evident from its influence on other branches of economics including public finance, industrial organization and monetary theory, the boundaries of this sphere are both ..."
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Cited by 720 (2 self)
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are both permeable and flexible. The complex interactions of time and uncertainty guarantee intellectual challenge and intrinsic excitement to the study of financial economics. Indeed, the mathematics of the subject contain some of the most interesting applications of probability and optimization theory
Symmetry and Related Properties via the Maximum Principle
, 1979
"... We prove symmetry, and some related properties, of positive solutions of second order elliptic equations. Our methods employ various forms of the maximum principle, and a device of moving parallel planes to a critical position, and then showing that the solution is symmetric about the limiting plan ..."
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Cited by 539 (4 self)
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We prove symmetry, and some related properties, of positive solutions of second order elliptic equations. Our methods employ various forms of the maximum principle, and a device of moving parallel planes to a critical position, and then showing that the solution is symmetric about the limiting
Worstcase equilibria
 IN PROCEEDINGS OF THE 16TH ANNUAL SYMPOSIUM ON THEORETICAL ASPECTS OF COMPUTER SCIENCE
, 1999
"... In a system in which noncooperative agents share a common resource, we propose the ratio between the worst possible Nash equilibrium and the social optimum as a measure of the effectiveness of the system. Deriving upper and lower bounds for this ratio in a model in which several agents share a ver ..."
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Cited by 851 (17 self)
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very simple network leads to some interesting mathematics, results, and open problems.
Results 11  20
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924,152