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Results 1 - 10
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19
Correction Correction: A Framework Phylogeny of the American Oak Clade Based on Sequenced RAD Data The PLOS ONE Staff
, 2014
"... The images for Figures 2 and 3 are incorrectly switched. The image that appears as Figure 2 should be Figure 3, and the image that appears as Figure 3 should be Figure 2. The figure legends appear in the correct order. ..."
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The images for Figures 2 and 3 are incorrectly switched. The image that appears as Figure 2 should be Figure 3, and the image that appears as Figure 3 should be Figure 2. The figure legends appear in the correct order.
DOI: 10.1080/10635150590945313 Branch-Length Prior Influences Bayesian Posterior Probability of Phylogeny
"... Abstract. — The Bayesian method for estimating species phylogenies from molecular sequence data provides an attractive alternative to maximum likelihood with nonparametric bootstrap due to the easy interpretation of posterior probabilities for trees and to availability of efficient computational alg ..."
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algorithms. However, for many data sets it produces extremely high posterior probabilities, sometimes for apparently incorrect clades. Here we use both computer simulation and empirical data analysis to examine the effect of the prior model for internal branch lengths. We found that posterior probabilities
Tiantan Strain Expressing an Avian-Derived Influenza H5N1 Hemagglutinin Induce Broadly Neutralizing Antibodies and Cross-Clade Protective Immunity in
, 2014
"... There is an error in the penultimate sentence of the second paragraph in the ‘‘MVTTHA-QH induced potent antibody response and protected mice against live heterologous human H5N1 influenza viruses’ ’ section of the Results. The correct sentence is: In contrast, animals which received MVTTS showed sig ..."
The relative performance of Bayesian and parsimony approaches when Sampling Characters . . .
, 2006
"... We tested whether it is beneficial for the accuracy of phylogenetic inference to sample characters that are evolving under different sets of parameters, using both Bayesian MCMC (Markov chain Monte Carlo) and parsimony approaches. We examined differential rates of evolution among characters, differe ..."
Characters, States, and Homology
"... and use of the incorrect Hastings ratio has a negligible ef-fect on the clade posteriors derived these data; the largest difference in clade posterior probability between the two runs was only 0.016. ..."
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and use of the incorrect Hastings ratio has a negligible ef-fect on the clade posteriors derived these data; the largest difference in clade posterior probability between the two runs was only 0.016.
E: Conditioned genome reconstruction: how to avoid choosing the conditioning genome
- Syst Biol 2007
"... Abstract.—Genome phylogenies can be inferred from data on the presence and absence of genes across taxa. Logdet distances may be a good method, because they allow expected genome size to vary across the tree. Recently, Lake and Rivera proposed conditioned genome reconstruction (calculation of logdet ..."
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Cited by 8 (0 self)
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. One of these methods, based on the BIONJ algorithm, performs well on simulated data and may have applications to other supertree problems. However, an analysis of 40 bacterial genomes using this method supports an incorrect clade of parasites. This is a common feature of model-based gene content
Corrigendum Corrigendum to ‘‘Phylogeography of Pseudacris regilla
, 2006
"... Two of the names we proposed for newly recognized species in the Pseudacris regilla complex are incorrect. The syn-onymy of the P. regilla complex is summarized in Frost (2004), including the list of correct available names. Jameson, Mac-key, and Richmond (Jameson et al., 1966) designated the specim ..."
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Two of the names we proposed for newly recognized species in the Pseudacris regilla complex are incorrect. The syn-onymy of the P. regilla complex is summarized in Frost (2004), including the list of correct available names. Jameson, Mac-key, and Richmond (Jameson et al., 1966) designated
Divergence Times of Eutherian Mammals
"... In the continuing debate about the timing of the origin of major extant placental clades, both proponents of a divergence after the Cretaceous-Tertiary (K-T) boundary and those advocating divergence deep within the Cretaceous too often miss what the Late Cretaceous record of placentals actually show ..."
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Cited by 2 (0 self)
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In the continuing debate about the timing of the origin of major extant placental clades, both proponents of a divergence after the Cretaceous-Tertiary (K-T) boundary and those advocating divergence deep within the Cretaceous too often miss what the Late Cretaceous record of placentals actually
Selection on females can create ‘larger males
- Proc. R. Soc. Lond., B
, 2001
"... In many bird and mammal species, males are signi¢cantly larger than females. The prevailing explana-tion for larger-sized males is that sexual selection drives increased male size. In addition, researchers commonly assume that the extent of dimorphism indicates the strength of selection for increase ..."
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Cited by 6 (1 self)
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inconsistent with eco-logical niche partitioning between the sexes and increased breeding bene¢ts from reduced female size as general explanations for the evolution of size dimorphism within the clade. We conclude that it is incor-rect to assume sexual dimorphism results from a single selective factor
REP provides meaningful measurement of support across datasets
"... a b s t r a c t The relative optimality of the best and next-best hypotheses indicates the strength of support for the optimal hypothesis and may be calculated as either the difference or ratio of their optimality scores. The Goodman-Bremer support measure (GB) calculates the support for a given cl ..."
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clade in the most parsimonious tree as the difference between the length of the optimal tree and the optimal tree that lacks that clade. The ratio of explanatory power (REP) support measure calculates support as the ratio of optimality scores, which simplifies to the ratio of observed GB and the maximum
Results 1 - 10
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19
