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10,668
Factor Graphs and the SumProduct Algorithm
 IEEE TRANSACTIONS ON INFORMATION THEORY
, 1998
"... A factor graph is a bipartite graph that expresses how a "global" function of many variables factors into a product of "local" functions. Factor graphs subsume many other graphical models including Bayesian networks, Markov random fields, and Tanner graphs. Following one simple c ..."
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Cited by 1791 (69 self)
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computational rule, the sumproduct algorithm operates in factor graphs to computeeither exactly or approximatelyvarious marginal functions by distributed messagepassing in the graph. A wide variety of algorithms developed in artificial intelligence, signal processing, and digital communications can
A Simple RuleBased Part of Speech Tagger
, 1992
"... Automatic part of speech tagging is an area of natural language processing where statistical techniques have been more successful than rule based methods. In this paper, we present a sim ple rulebased part of speech tagger which automatically acquires its rules and tags with accuracy coinparable ..."
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Cited by 596 (9 self)
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to stochastic taggers. The rulebased tagger has many advantages over these taggers, including: a vast reduction in stored information required, the perspicuity of a sinall set of meaningful rules, ease of finding and implementing improvements to the tagger, and better portability from one tag set, cor pus
Laplacian Eigenmaps for Dimensionality Reduction and Data Representation
, 2003
"... One of the central problems in machine learning and pattern recognition is to develop appropriate representations for complex data. We consider the problem of constructing a representation for data lying on a lowdimensional manifold embedded in a highdimensional space. Drawing on the correspondenc ..."
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Cited by 1226 (15 self)
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on the correspondence between the graph Laplacian, the Laplace Beltrami operator on the manifold, and the connections to the heat equation, we propose a geometrically motivated algorithm for representing the highdimensional data. The algorithm provides a computationally efficient approach to nonlinear dimensionality
Modeling and simulation of genetic regulatory systems: A literature review
 JOURNAL OF COMPUTATIONAL BIOLOGY
, 2002
"... In order to understand the functioning of organisms on the molecular level, we need to know which genes are expressed, when and where in the organism, and to which extent. The regulation of gene expression is achieved through genetic regulatory systems structured by networks of interactions between ..."
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Cited by 738 (14 self)
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for the modeling and simulation of genetic regulatory networks will be indispensable. This paper reviews formalisms that have been employed in mathematical biology and bioinformatics to describe genetic regulatory systems, in particular directed graphs, Bayesian networks, Boolean networks and their generalizations
The University of Florida sparse matrix collection
 NA DIGEST
, 1997
"... The University of Florida Sparse Matrix Collection is a large, widely available, and actively growing set of sparse matrices that arise in real applications. Its matrices cover a wide spectrum of problem domains, both those arising from problems with underlying 2D or 3D geometry (structural enginee ..."
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Cited by 536 (17 self)
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engineering, computational fluid dynamics, model reduction, electromagnetics, semiconductor devices, thermodynamics, materials, acoustics, computer graphics/vision, robotics/kinematics, and other discretizations) and those that typically do not have such geometry (optimization, circuit simulation, networks
Laplacian eigenmaps and spectral techniques for embedding and clustering.
 Proceeding of Neural Information Processing Systems,
, 2001
"... Abstract Drawing on the correspondence between the graph Laplacian, the LaplaceBeltrami op erator on a manifold , and the connections to the heat equation , we propose a geometrically motivated algorithm for constructing a representation for data sampled from a low dimensional manifold embedded in ..."
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Cited by 668 (7 self)
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Abstract Drawing on the correspondence between the graph Laplacian, the LaplaceBeltrami op erator on a manifold , and the connections to the heat equation , we propose a geometrically motivated algorithm for constructing a representation for data sampled from a low dimensional manifold embedded
Loopy belief propagation for approximate inference: An empirical study. In:
 Proceedings of Uncertainty in AI,
, 1999
"... Abstract Recently, researchers have demonstrated that "loopy belief propagation" the use of Pearl's polytree algorithm in a Bayesian network with loops can perform well in the context of errorcorrecting codes. The most dramatic instance of this is the near Shannonlimit performanc ..."
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Cited by 676 (15 self)
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with loops (undirected cycles). The algorithm is an exact inference algorithm for singly connected networks the beliefs converge to the cor rect marginals in a number of iterations equal to the diameter of the graph.1 However, as Pearl noted, the same algorithm will not give the correct beliefs for mul
Codes and Decoding on General Graphs
, 1996
"... Iterative decoding techniques have become a viable alternative for constructing high performance coding systems. In particular, the recent success of turbo codes indicates that performance close to the Shannon limit may be achieved. In this thesis, it is showed that many iterative decoding algorithm ..."
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Cited by 359 (1 self)
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is replaced by an arbitrary graph, the "Tanner graph". With cyclefree Tanner graphs, the resulting decoding algorithms (e.g., Viterbi decoding) are maximumlikelihood but suffer from an exponentially increasing complexity. Iterative decoding occurs when the Tanner graph has cycles (e.g., turbo
MetaCost: A General Method for Making Classifiers CostSensitive
 In Proceedings of the Fifth International Conference on Knowledge Discovery and Data Mining
, 1999
"... Research in machine learning, statistics and related fields has produced a wide variety of algorithms for classification. However, most of these algorithms assume that all errors have the same cost, which is seldom the case in KDD prob lems. Individually making each classification learner costsensi ..."
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Cited by 415 (4 self)
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functioning or change to it. Unlike stratification, MetaCost is applicable to any number of classes and to arbitrary cost matrices. Empirical trials on a large suite of benchmark databases show that MetaCost almost always produces large cost reductions compared to the costblind classifier used (C4.5RULES
A Growing Neural Gas Network Learns Topologies
 Advances in Neural Information Processing Systems 7
, 1995
"... An incremental network model is introduced which is able to learn the important topological relations in a given set of input vectors by means of a simple Hebblike learning rule. In contrast to previous approaches like the "neural gas" method of Martinetz and Schulten (1991, 1994), this m ..."
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Cited by 401 (5 self)
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An incremental network model is introduced which is able to learn the important topological relations in a given set of input vectors by means of a simple Hebblike learning rule. In contrast to previous approaches like the "neural gas" method of Martinetz and Schulten (1991, 1994
Results 1  10
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10,668