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SNOPT: An SQP Algorithm For LargeScale Constrained Optimization
, 2002
"... Sequential quadratic programming (SQP) methods have proved highly effective for solving constrained optimization problems with smooth nonlinear functions in the objective and constraints. Here we consider problems with general inequality constraints (linear and nonlinear). We assume that first deriv ..."
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Cited by 597 (24 self)
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Sequential quadratic programming (SQP) methods have proved highly effective for solving constrained optimization problems with smooth nonlinear functions in the objective and constraints. Here we consider problems with general inequality constraints (linear and nonlinear). We assume that first
MAFFT version 5: improvement in accuracy of multiple sequence alignment
 NUCLEIC ACIDS RES
, 2005
"... The accuracy of multiple sequence alignment program MAFFT has been improved. The new version (5.3) of MAFFT offers new iterative refinement options, HINSi, FINSi and GINSi, in which pairwise alignment information are incorporated into objective function. These new options of MAFFT showed high ..."
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Cited by 801 (5 self)
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the effect of the number of homologues included in an alignment. For a multiple alignment consisting of 8 sequences with low similarity, the accuracy was improved (2–10 percentage points) when the sequences were aligned together with dozens of their close homologues (Evalue, 105–1020) collected from a
Making LargeScale Support Vector Machine Learning Practical
, 1998
"... Training a support vector machine (SVM) leads to a quadratic optimization problem with bound constraints and one linear equality constraint. Despite the fact that this type of problem is well understood, there are many issues to be considered in designing an SVM learner. In particular, for large lea ..."
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Cited by 628 (1 self)
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learning tasks with many training examples, offtheshelf optimization techniques for general quadratic programs quickly become intractable in their memory and time requirements. SVM light1 is an implementation of an SVM learner which addresses the problem of large tasks. This chapter presents
Making LargeScale SVM Learning Practical
, 1998
"... Training a support vector machine (SVM) leads to a quadratic optimization problem with bound constraints and one linear equality constraint. Despite the fact that this type of problem is well understood, there are many issues to be considered in designing an SVM learner. In particular, for large lea ..."
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Cited by 1861 (17 self)
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learning tasks with many training examples, offtheshelf optimization techniques for general quadratic programs quickly become intractable in their memory and time requirements. SV M light1 is an implementation of an SVM learner which addresses the problem of large tasks. This chapter presents algorithmic
Interiorpoint Methods
, 2000
"... The modern era of interiorpoint methods dates to 1984, when Karmarkar proposed his algorithm for linear programming. In the years since then, algorithms and software for linear programming have become quite sophisticated, while extensions to more general classes of problems, such as convex quadrati ..."
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Cited by 612 (15 self)
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The modern era of interiorpoint methods dates to 1984, when Karmarkar proposed his algorithm for linear programming. In the years since then, algorithms and software for linear programming have become quite sophisticated, while extensions to more general classes of problems, such as convex
Large margin methods for structured and interdependent output variables
 JOURNAL OF MACHINE LEARNING RESEARCH
, 2005
"... Learning general functional dependencies between arbitrary input and output spaces is one of the key challenges in computational intelligence. While recent progress in machine learning has mainly focused on designing flexible and powerful input representations, this paper addresses the complementary ..."
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Cited by 624 (12 self)
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to accomplish this, we propose to appropriately generalize the wellknown notion of a separation margin and derive a corresponding maximummargin formulation. While this leads to a quadratic program with a potentially prohibitive, i.e. exponential, number of constraints, we present a cutting plane algorithm
Scatter/Gather: A Clusterbased Approach to Browsing Large Document Collections
, 1992
"... Document clustering has not been well received as an information retrieval tool. Objections to its use fall into two main categories: first, that clustering is too slow for large corpora (with running time often quadratic in the number of documents); and second, that clustering does not appreciably ..."
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Cited by 777 (12 self)
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Document clustering has not been well received as an information retrieval tool. Objections to its use fall into two main categories: first, that clustering is too slow for large corpora (with running time often quadratic in the number of documents); and second, that clustering does not appreciably
Grounding in communication
 In
, 1991
"... We give a general analysis of a class of pairs of positive selfadjoint operators A and B for which A + XB has a limit (in strong resolvent sense) as h10 which is an operator A, # A! Recently, Klauder [4] has discussed the following example: Let A be the operator(d2/A2) + x2 on L2(R, dx) and let ..."
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Cited by 1122 (20 self)
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, which Klauder ignores, below). He finds that the eigenvalues E,(X) and eigenvectors &(A) do not converge to 8, and H, but rather AO) + (en 4 Ho+, J%(X)+ gn+1 I n = 0, 2,..., We wish to discuss in detail the general phenomena which Klauder has uncovered. We freely use the techniques of quadratic
On the algorithmic implementation of multiclass kernelbased vector machines
 Journal of Machine Learning Research
"... In this paper we describe the algorithmic implementation of multiclass kernelbased vector machines. Our starting point is a generalized notion of the margin to multiclass problems. Using this notion we cast multiclass categorization problems as a constrained optimization problem with a quadratic ob ..."
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Cited by 559 (13 self)
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In this paper we describe the algorithmic implementation of multiclass kernelbased vector machines. Our starting point is a generalized notion of the margin to multiclass problems. Using this notion we cast multiclass categorization problems as a constrained optimization problem with a quadratic
Maxmargin Markov networks
, 2003
"... In typical classification tasks, we seek a function which assigns a label to a single object. Kernelbased approaches, such as support vector machines (SVMs), which maximize the margin of confidence of the classifier, are the method of choice for many such tasks. Their popularity stems both from the ..."
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Cited by 604 (15 self)
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for learning M 3 networks based on a compact quadratic program formulation. We provide a new theoretical bound for generalization in structured domains. Experiments on the task of handwritten character recognition and collective hypertext classification demonstrate very significant gains over previous
Results 1  10
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